Description

Masks out highly repetitive DNA sequences with low complexity in a genome

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

counts:file

valid unit counts file

*.{ascii,binary,oascii,obinary,txt}

Output

name:type
description
pattern

converted

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

${output}:file

converted file

versions

versions.yml:file

File containing software versions

versions.yml

Tools

windowmasker
US-Government-Work

A program to mask highly repetitive and low complexity DNA sequences within a genome.