Description

Masks out highly repetitive DNA sequences with low complexity in a genome

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

counts (file)

valid unit counts file

*.{ascii,binary,oascii,obinary,txt}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

counts (file)

valid unit counts file

*.{ascii,binary,oascii,obinary}

versions (file)

File containing software versions

versions.yml
maintainer
Github user alxndrdiaz
get in touch
Ask a question on Slack Open an issue on GitHub

Tools

windowmasker
US-Government-Work

A program to mask highly repetitive and low complexity DNA sequences within a genome.

blast.ncbi.nlm.nih.gov/Blast.cgi ftp://ftp.ncbi.nlm.nih.gov/pub/agarwala/windowmasker/README.windowmasker 10.1016/S0022-2836(05)80360-2