Description

Masks out highly repetitive DNA sequences with low complexity in a genome

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

counts{:bash}

:file

valid unit counts file

*.{ascii,binary,oascii,obinary,txt}

Output

name:type
description
pattern

converted{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

${output}{:bash}

:file

converted file

versions{:bash}

versions.yml{:bash}

:file

File containing software versions

versions.yml

Tools

windowmasker
US-Government-Work

A program to mask highly repetitive and low complexity DNA sequences within a genome.