Masks out highly repetitive DNA sequences with low complexity in a genome
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
counts{:bash}
:file
valid unit counts file
*.{ascii,binary,oascii,obinary,txt}
converted{:bash}
${output}{:bash}
converted file
versions_windowmasker{:bash}
${task.process}{:bash}
:string
The name of the process
windowmasker{:bash}
The name of the tool
windowmasker -version-full | head -n 1 | sed 's/^.*windowmasker. //; s/ .*\$//'{:bash}
The expression to obtain the version of the tool
versions{:bash}
:eval
A program to mask highly repetitive and low complexity DNA sequences within a genome.
