modules/windowmasker_mkcounts

A program to generate frequency counts of repetitive units.

fastaintervalwindowmasker

https://github.com/nf-core/modules/[...]/modules/nf-core/windowmasker/mkcounts

Description

A program to generate frequency counts of repetitive units.

Input

name:type

description

pattern

`meta:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

`ref:file`

An input nucleotide fasta file.

Output

name:type

description

pattern

`counts`

`meta:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

`*.txt:file`

A file containing frequency counts of repetitive units.

*.txt

`versions`

`versions.yml:file`

File containing software versions

versions.yml

Tools

windowmasker
MIT

A program to mask highly repetitive and low complexity DNA sequences within a genome.

github.com/ncbi/ncbi-cxx-toolkit-public ncbi.github.io/cxx-toolkit

modules/windowmasker_mkcounts

Description

Input

meta:map

ref:file

Output

counts

meta:map

*.txt:file

versions

versions.yml:file

Tools

windowmasker MIT

`meta:map`

`ref:file`

`counts`

`meta:map`

`*.txt:file`

`versions`

`versions.yml:file`

windowmasker
MIT