Description

A program to generate frequency counts of repetitive units.

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

ref:file

An input nucleotide fasta file.

Output

name:type
description
pattern

counts

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.txt:file

A file containing frequency counts of repetitive units.

*.txt

versions

versions.yml:file

File containing software versions

versions.yml

Tools

windowmasker
MIT

A program to mask highly repetitive and low complexity DNA sequences within a genome.