Description

A program to generate frequency counts of repetitive units.

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

ref{:bash}

:file

An input nucleotide fasta file.

Output

name:type
description
pattern

counts{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.txt{:bash}

:file

A file containing frequency counts of repetitive units.

*.txt

versions{:bash}

versions.yml{:bash}

:file

File containing software versions

versions.yml

Tools

windowmasker
MIT

A program to mask highly repetitive and low complexity DNA sequences within a genome.