modules/windowmasker_ustat

A program to take a counts file and creates a file of genomic co-ordinates to be masked.

fastaintervalwindowmasker

https://github.com/nf-core/modules/[...]/modules/nf-core/windowmasker/ustat

Description

A program to take a counts file and creates a file of genomic co-ordinates to be masked.

Input

name:type

description

pattern

`meta:map`

Groovy Map containing sample information e.g. [ id:‘test’ ]

`counts:file`

Contains count data of repetitive regions.

`meta2:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

`ref:file`

An input nucleotide fasta file.

Output

name:type

description

pattern

`intervals`

`meta:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

`${output}:file`

intervals

`versions`

`versions.yml:file`

File containing software versions

versions.yml

Tools

windowmasker
MIT

A program to mask highly repetitive and low complexity DNA sequences within a genome.

github.com/ncbi/ncbi-cxx-toolkit-public ncbi.github.io/cxx-toolkit

modules/windowmasker_ustat

Description

Input

meta:map

counts:file

meta2:map

ref:file

Output

intervals

meta:map

${output}:file

versions

versions.yml:file

Tools

windowmasker MIT

`meta:map`

`counts:file`

`meta2:map`

`ref:file`

`intervals`

`meta:map`

`${output}:file`

`versions`

`versions.yml:file`

windowmasker
MIT