Description

A program to take a counts file and creates a file of genomic co-ordinates to be masked.

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’ ]

counts:file

Contains count data of repetitive regions.

meta2:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

ref:file

An input nucleotide fasta file.

Output

name:type
description
pattern

intervals

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

${output}:file

intervals

versions

versions.yml:file

File containing software versions

versions.yml

Tools

windowmasker
MIT

A program to mask highly repetitive and low complexity DNA sequences within a genome.