modules/wipertools_fastqgather

A tool of the wipertools suite that merges FASTQ chunks produced by wipertools_fastqscatter

fastqmergeunion

https://github.com/nf-core/modules/[...]/modules/nf-core/wipertools/fastqgather

Description

A tool of the wipertools suite that merges FASTQ chunks produced by wipertools_fastqscatter

Input

name:type

description

pattern

`meta:map`

Groovy Map containing sample information e.g. [ id:‘test’ ]

`fastq:file`

List of FASTQ chunk files to be merged

*.{fastq,fastq.gz}

Output

name:type

description

pattern

`gathered_fastq`

`meta:map`

Groovy Map containing sample information e.g. [ id:‘test’ ]

`${prefix}.fastq.gz:file`

The resulting FASTQ file

*.fastq.gz

`versions`

`versions.yml:file`

File containing software versions

versions.yml

Tools

fastqgather
GPL v2-or-later

A tool of the wipertools suite that merges FASTQ chunks produced by wipertools_fastqscatter.

args_id: $args

github.com/mazzalab/fastqwiper no DOI available

modules/wipertools_fastqgather

Description

Input

`meta:map`

`fastq:file`

Output

`gathered_fastq`

`meta:map`

`${prefix}.fastq.gz:file`

`versions`

`versions.yml:file`

Tools

fastqgather
GPL v2-or-later

included in

maintainers

get in touch

modules/wipertools_fastqgather

Description

Input

meta:map

fastq:file

Output

gathered_fastq

meta:map

${prefix}.fastq.gz:file

versions

versions.yml:file

Tools

fastqgather GPL v2-or-later

included in

maintainers

get in touch

`meta:map`

`fastq:file`

`gathered_fastq`

`meta:map`

`${prefix}.fastq.gz:file`

`versions`

`versions.yml:file`

fastqgather
GPL v2-or-later