modules/wisecondorx_gender

Returns the gender of a .npz resulting from convert, based on a Gaussian mixture model trained during the newref phase

copy number analysisgender determinationnpz

https://github.com/nf-core/modules/[...]/modules/nf-core/wisecondorx/gender

Description

Returns the gender of a .npz resulting from convert, based on a Gaussian mixture model trained during the newref phase

Input

name:type

description

pattern

`meta:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

`npz:file`

Single sample NPZ file (from which to determine the gender)

*.npz

`meta2:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

`reference:file`

Reference NPZ file

*.npz

Output

name:type

description

pattern

`gender`

`meta:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

`versions`

`versions.yml:file`

File containing software versions

versions.yml

Tools

wisecondorx
Attribution-NonCommercial-ShareAlike CC BY-NC-SA

WIthin-SamplE COpy Number aberration DetectOR, including sex chromosomes

github.com/CenterForMedicalGeneticsGhent/WisecondorX 10.1093/nar/gky1263

modules/wisecondorx_gender

Description

Input

meta:map

npz:file

meta2:map

reference:file

Output

gender

meta:map

versions

versions.yml:file

Tools

wisecondorx Attribution-NonCommercial-ShareAlike CC BY-NC-SA

`meta:map`

`npz:file`

`meta2:map`

`reference:file`

`gender`

`meta:map`

`versions`

`versions.yml:file`

wisecondorx
Attribution-NonCommercial-ShareAlike CC BY-NC-SA