Description

Returns the gender of a .npz resulting from convert, based on a Gaussian mixture model trained during the newref phase

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

npz (file)

Single sample NPZ file (from which to determine the gender)

*.npz

reference (file)

Reference NPZ file

*.npz

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

gender (string)

The gender of the input NPZ file

(fe)?male
author
Github user nvnieuwk
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Tools

wisecondorx
Attribution-NonCommercial-ShareAlike CC BY-NC-SA

WIthin-SamplE COpy Number aberration DetectOR, including sex chromosomes

github.com/CenterForMedicalGeneticsGhent/WisecondorX 10.1093/nar/gky1263