modules/wisecondorx_newref

Create a new reference using healthy reference samples

referencecopy number alterationsnpz

https://github.com/nf-core/modules/[...]/modules/nf-core/wisecondorx/newref

Description

Create a new reference using healthy reference samples

Input

name:type

description

pattern

`meta:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

`inputs:file`

Multiple NPZ files from healthy patients

*.{npz}

Output

name:type

description

pattern

`npz`

`meta:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

`*.npz:file`

The reference NPZ file

*.{npz}

`versions`

`versions.yml:file`

File containing software versions

versions.yml

Tools

wisecondorx
Attribution-NonCommercial-ShareAlike CC BY-NC-SA

WIthin-SamplE COpy Number aberration DetectOR, including sex chromosomes

github.com/CenterForMedicalGeneticsGhent/WisecondorX 10.1093/nar/gky1263

modules/wisecondorx_newref

Description

Input

`meta:map`

`inputs:file`

Output

`npz`

`meta:map`

`*.npz:file`

`versions`

`versions.yml:file`

Tools

wisecondorx
Attribution-NonCommercial-ShareAlike CC BY-NC-SA

maintainer

get in touch

modules/wisecondorx_newref

Description

Input

meta:map

inputs:file

Output

npz

meta:map

*.npz:file

versions

versions.yml:file

Tools

wisecondorx Attribution-NonCommercial-ShareAlike CC BY-NC-SA

maintainer

get in touch

`meta:map`

`inputs:file`

`npz`

`meta:map`

`*.npz:file`

`versions`

`versions.yml:file`

wisecondorx
Attribution-NonCommercial-ShareAlike CC BY-NC-SA