Description

Create a new reference using healthy reference samples

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

inputs{:bash}

:file

Multiple NPZ files from healthy patients

*.{npz}

Output

name:type
description
pattern

npz{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.npz{:bash}

:file

The reference NPZ file

*.{npz}

versions_wisecondorx{:bash}

${task.process}{:bash}

:string

The name of the process

wisecondorx{:bash}

:string

The name of the tool

pip list |& sed -n 's/wisecondorx *//p'{:bash}

:eval

The expression to obtain the version of the tool

Topics

name:type
description
pattern

versions{:bash}

${task.process}{:bash}

:string

The name of the process

wisecondorx{:bash}

:string

The name of the tool

pip list |& sed -n 's/wisecondorx *//p'{:bash}

:eval

The expression to obtain the version of the tool

Tools

wisecondorx
Attribution-NonCommercial-ShareAlike CC BY-NC-SA

WIthin-SamplE COpy Number aberration DetectOR, including sex chromosomes