Fast lightweight accurate xenograft sorting
host_fasta{:bash}
:file
Reference genome fasta file from host, compressed or uncompressed.
graft_fasta{:bash}
Reference genome fasta file from graft, compressed or uncompressed.
index{:bash}
:string
File name prefix to store index files.
nobjects{:bash}
Number of k-mers that will be stored in the hash table. Underscore should be used, i.e for 1000000, it should be typed 1_000_000.
mask{:bash}
Gapped k-mer mask (quoted string like ’###_###’).
hash{:bash}
${index}.hash{:bash}
File with index hash file.
*hash
info{:bash}
${index}.info{:bash}
File with index info file.
*info
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
A fast xenograft read sorter based on space-efficient k-mer hashing
