Performs assembly scaffolding using YaHS
meta
Groovy Map containing sample information e.g. [ id:‘test’ ]
hic_map
BED file containing coordinates of read alignments
*.{bed,bam,bin}
fasta
FASTA reference file
*.{fasta,fa}
fai
index of the reference file
*.{fai}
versions
File containing software versions
versions.yml
scaffolds_fasta
FASTA file with resulting contigs
*scaffolds_final.fa
scaffolds_agp
AGP file containing contigs placing coordinates
*scaffolds_final.agp
binary
BIN file with alignment results of Hi-C reads to the contigs in internal YaHS binary format
*bin
YaHS, yet another Hi-C scaffolding tool.
