Description

Builds a YARA index for a reference genome

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

fasta{:bash}

:file

Input genome fasta file

Output

name:type
description
pattern

index{:bash}

meta{:bash}

:file

YARA genome index files

yara.*

${fasta}*{:bash}

:file

YARA genome index files

yara.*

versions{:bash}

versions.yml{:bash}

:file

File containing software versions

versions.yml

Tools

yara
https://raw.githubusercontent.com/seqan/seqan/develop/apps/yara/LICENSE

Yara is an exact tool for aligning DNA sequencing reads to reference genomes.