Align reads to a reference genome using YARA
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end
reads:file
List of input FastQ files of size 1 and 2 for single-end and paired-end data, respectively.
meta2:map
Groovy Map containing index information e.g. [ id:‘test’ ]
index:file
YARA genome index files
bam
*.mapped.bam:file
Sorted BAM file
*.{bam}
bai
*.mapped.bam.bai:file
Sorted BAM file index
*.{bai}
versions
versions.yml:file
File containing software versions
versions.yml
Yara is an exact tool for aligning DNA sequencing reads to reference genomes.
