Align reads to a reference genome using YARA
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
reads{:bash}
:file
List of input FastQ files of size 1 and 2 for single-end and paired-end data, respectively.
meta2{:bash}
Groovy Map containing index information e.g. [ id:‘test’ ]
index{:bash}
YARA genome index files
bam{:bash}
*.mapped.bam{:bash}
Sorted BAM file
*.{bam}
bai{:bash}
*.mapped.bam.bai{:bash}
Sorted BAM file index
*.{bai}
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
Yara is an exact tool for aligning DNA sequencing reads to reference genomes.
