• Home
  • Pipelines
  • Resources
    • Components
    • Modules
    • Subworkflows

    • Configs
    • Shared configs
  • Docs
  • Community
    • What's happening
    • Blog

    • Events
    • Bytesize Talks
    • Hackathons
    • Training
    • Talks

    • Programs and groups
    • Special interest groups
    • Mentorships
    • Contributors
    • Shop new
    • Connect game 👾
  • About
    • About nf-core
    • Stickers
    • Governance
    • Marketing
    • Code of conduct

    • Publications
    • Statistics

    • Join nf-core
    • Select theme
    • Light
    • Dark
    • System
    • Select theme
    • Light
    • Dark
    • System
    Join nf-core Join nf-core

nf-core/rnaseq

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

rnarna-seq
These pages are for an old version of the pipeline (3.13.2). The latest stable release is 3.18.0 .
Launch version 3.13.2 https://github.com/nf-core/rnaseq
  • Introduction
  • Usage
  • Parameters
  • Output
  • Results
  • Releases
    • 3.18.0
    • 3.17.0
    • 3.16.1
    • 3.16.0
    • 3.15.1
    • 3.15.0
    • 3.14.0
    • 3.13.2
    • 3.13.1
    • 3.13.0
    • 3.12.0
    • 3.11.2
    • 3.11.1
    • 3.11.0
    • 3.10.1
    • 3.10
    • 3.9
    • 3.8.1
    • 3.8
    • 3.7
    • 3.6
    • 3.5
    • 3.4
    • 3.3
    • 3.2
    • 3.1
    • 3.0
    • 2.0
    • 1.4.2
    • 1.4.1
    • 1.4
    • 1.3
    • 1.2
    • 1.1
    • 1.0
    • dev
Introduction Usage Parameters Output Results Releases
  • 3.18.0
  • 3.17.0
  • 3.16.1
  • 3.16.0
  • 3.15.1
  • 3.15.0
  • 3.14.0
  • 3.13.2
  • 3.13.1
  • 3.13.0
  • 3.12.0
  • 3.11.2
  • 3.11.1
  • 3.11.0
  • 3.10.1
  • 3.10
  • 3.9
  • 3.8.1
  • 3.8
  • 3.7
  • 3.6
  • 3.5
  • 3.4
  • 3.3
  • 3.2
  • 3.1
  • 3.0
  • 2.0
  • 1.4.2
  • 1.4.1
  • 1.4
  • 1.3
  • 1.2
  • 1.1
  • 1.0
  • dev
  1. nf-core-awsmegatests
  2. rnaseq
  3. results-a10f41afa204538d5dcc89a5910c299d68f94f41/
  • Name Last Modified Size
  • aligner_star_rsem/ aligner_star_salmon/
    Making awesome workflows since 2018.

    Supported by:

    + + +
    See the source code for this website on GitHub:
    https://github.com/nf-core/website