nf-core/seqinspector

Dedicated QC-only pipeline for sequencing data. The pipeline will run a (potentially large) set of QC tools and can output global and group specific Multiqc reports. The pipeline is targeting core facilities or research groups with larger sequencing throughput.

genomicsquality-control

These pages are for an old version of the pipeline (1.0.0). The latest stable release is 1.0.1 .

Launch version 1.0.0 https://github.com/nf-core/seqinspector

Name Last Modified Size

bwamem2_index/ bwamem2_mem/ multiqc/ picard_collectmultiplemetrics/ pipeline_info/ rundirparser/ samtools_faidx/ seqfu_stats/

Bpacificus-ATCC10987-rep1_01_1_fastqc.html

about 1 month 563 kB

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Bpacificus-ATCC10987-rep1_01_1_fastqc.zip

about 1 month 350 kB

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Bpacificus-ATCC10987-rep1_01_1_screen.html

about 1 month 3.36 MB

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Bpacificus-ATCC10987-rep1_01_1_screen.png

about 1 month 6.12 kB

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Bpacificus-ATCC10987-rep1_01_1_screen.txt

about 1 month 512 B

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Bpacificus-ATCC10987-rep1_01_2_fastqc.html

about 1 month 562 kB

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Bpacificus-ATCC10987-rep1_01_2_fastqc.zip

about 1 month 344 kB

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Bpacificus-ATCC10987-rep1_01_2_screen.html

about 1 month 3.36 MB

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Bpacificus-ATCC10987-rep1_01_2_screen.png

about 1 month 6.13 kB

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Bpacificus-ATCC10987-rep1_01_2_screen.txt

about 1 month 511 B

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Bpacificus-ATCC10987-rep2_02_1_fastqc.html

about 1 month 557 kB

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Bpacificus-ATCC10987-rep2_02_1_fastqc.zip

about 1 month 339 kB

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Bpacificus-ATCC10987-rep2_02_1_screen.html

about 1 month 3.36 MB

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Bpacificus-ATCC10987-rep2_02_1_screen.png

about 1 month 6.15 kB

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Bpacificus-ATCC10987-rep2_02_1_screen.txt

about 1 month 512 B

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Bpacificus-ATCC10987-rep2_02_2_fastqc.html

about 1 month 562 kB

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Bpacificus-ATCC10987-rep2_02_2_fastqc.zip

about 1 month 344 kB

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Bpacificus-ATCC10987-rep2_02_2_screen.html

about 1 month 3.36 MB

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Bpacificus-ATCC10987-rep2_02_2_screen.png

about 1 month 6.16 kB

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Bpacificus-ATCC10987-rep2_02_2_screen.txt

about 1 month 511 B

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Bpacificus-ATCC10987-rep3_03_1_fastqc.html

about 1 month 561 kB

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Bpacificus-ATCC10987-rep3_03_1_fastqc.zip

about 1 month 348 kB

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Bpacificus-ATCC10987-rep3_03_1_screen.html

about 1 month 3.36 MB

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Bpacificus-ATCC10987-rep3_03_1_screen.png

about 1 month 6.15 kB

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Bpacificus-ATCC10987-rep3_03_1_screen.txt

about 1 month 512 B

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Bpacificus-ATCC10987-rep3_03_2_fastqc.html

about 1 month 562 kB

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Bpacificus-ATCC10987-rep3_03_2_fastqc.zip

about 1 month 347 kB

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Bpacificus-ATCC10987-rep3_03_2_screen.html

about 1 month 3.36 MB

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Bpacificus-ATCC10987-rep3_03_2_screen.png

about 1 month 6.18 kB

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Bpacificus-ATCC10987-rep3_03_2_screen.txt

about 1 month 511 B

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Bpacificus-ATCC10987-rep4_04_1_fastqc.html

about 1 month 561 kB

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Bpacificus-ATCC10987-rep4_04_1_fastqc.zip

about 1 month 345 kB

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Bpacificus-ATCC10987-rep4_04_1_screen.html

about 1 month 3.36 MB

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Bpacificus-ATCC10987-rep4_04_1_screen.png

about 1 month 6.15 kB

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Bpacificus-ATCC10987-rep4_04_1_screen.txt

about 1 month 512 B

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Bpacificus-ATCC10987-rep4_04_2_fastqc.html

about 1 month 567 kB

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Bpacificus-ATCC10987-rep4_04_2_fastqc.zip

about 1 month 351 kB

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Bpacificus-ATCC10987-rep4_04_2_screen.html

about 1 month 3.36 MB

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Bpacificus-ATCC10987-rep4_04_2_screen.png

about 1 month 6.18 kB

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Bpacificus-ATCC10987-rep4_04_2_screen.txt

about 1 month 511 B

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Bpacificus-ATCC10987-rep5_05_1_fastqc.html

about 1 month 560 kB

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Bpacificus-ATCC10987-rep5_05_1_fastqc.zip

about 1 month 347 kB

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Bpacificus-ATCC10987-rep5_05_1_screen.html

about 1 month 3.36 MB

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Bpacificus-ATCC10987-rep5_05_1_screen.png

about 1 month 6.16 kB

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Bpacificus-ATCC10987-rep5_05_1_screen.txt

about 1 month 512 B

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Bpacificus-ATCC10987-rep5_05_2_fastqc.html

about 1 month 566 kB

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Bpacificus-ATCC10987-rep5_05_2_fastqc.zip

about 1 month 348 kB

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Bpacificus-ATCC10987-rep5_05_2_screen.html

about 1 month 3.36 MB

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Bpacificus-ATCC10987-rep5_05_2_screen.png

about 1 month 6.16 kB

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Bpacificus-ATCC10987-rep5_05_2_screen.txt

about 1 month 511 B

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Bpacificus-ATCC10987-rep6_06_1_fastqc.html

about 1 month 554 kB

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Bpacificus-ATCC10987-rep6_06_1_fastqc.zip

about 1 month 335 kB

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Bpacificus-ATCC10987-rep6_06_1_screen.html

about 1 month 3.36 MB

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Bpacificus-ATCC10987-rep6_06_1_screen.png

about 1 month 6.17 kB

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Bpacificus-ATCC10987-rep6_06_1_screen.txt

about 1 month 512 B

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Bpacificus-ATCC10987-rep6_06_2_fastqc.html

about 1 month 561 kB

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Bpacificus-ATCC10987-rep6_06_2_fastqc.zip

about 1 month 342 kB

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Bpacificus-ATCC10987-rep6_06_2_screen.html

about 1 month 3.36 MB

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Bpacificus-ATCC10987-rep6_06_2_screen.png

about 1 month 6.18 kB

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Bpacificus-ATCC10987-rep6_06_2_screen.txt

about 1 month 512 B

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Bpacificus-ATCC10987-rep7_07_1_fastqc.html

about 1 month 557 kB

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Bpacificus-ATCC10987-rep7_07_1_fastqc.zip

about 1 month 338 kB

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Bpacificus-ATCC10987-rep7_07_1_screen.html

about 1 month 3.36 MB

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Bpacificus-ATCC10987-rep7_07_1_screen.png

about 1 month 6.15 kB

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Bpacificus-ATCC10987-rep7_07_1_screen.txt

about 1 month 512 B

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Bpacificus-ATCC10987-rep7_07_2_fastqc.html

about 1 month 564 kB

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Bpacificus-ATCC10987-rep7_07_2_fastqc.zip

about 1 month 344 kB

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Bpacificus-ATCC10987-rep7_07_2_screen.html

about 1 month 3.36 MB

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Bpacificus-ATCC10987-rep7_07_2_screen.png

about 1 month 6.16 kB

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Bpacificus-ATCC10987-rep7_07_2_screen.txt

about 1 month 511 B

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Bpacificus-ATCC10987-rep8_08_1_fastqc.html

about 1 month 558 kB

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Bpacificus-ATCC10987-rep8_08_1_fastqc.zip

about 1 month 344 kB

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Bpacificus-ATCC10987-rep8_08_1_screen.html

about 1 month 3.36 MB

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Bpacificus-ATCC10987-rep8_08_1_screen.png

about 1 month 6.18 kB

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Bpacificus-ATCC10987-rep8_08_1_screen.txt

about 1 month 512 B

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Bpacificus-ATCC10987-rep8_08_2_fastqc.html

about 1 month 563 kB

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Bpacificus-ATCC10987-rep8_08_2_fastqc.zip

about 1 month 344 kB

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Bpacificus-ATCC10987-rep8_08_2_screen.html

about 1 month 3.36 MB

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Bpacificus-ATCC10987-rep8_08_2_screen.png

about 1 month 6.19 kB

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Bpacificus-ATCC10987-rep8_08_2_screen.txt

about 1 month 512 B

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Ecoli-ATCC700926-rep1_09_1_fastqc.html

about 1 month 559 kB

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Ecoli-ATCC700926-rep1_09_1_fastqc.zip

about 1 month 345 kB

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Ecoli-ATCC700926-rep1_09_1_screen.html

about 1 month 3.36 MB

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Ecoli-ATCC700926-rep1_09_1_screen.png

about 1 month 6.08 kB

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Ecoli-ATCC700926-rep1_09_1_screen.txt

about 1 month 512 B

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Ecoli-ATCC700926-rep1_09_2_fastqc.html

about 1 month 558 kB

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Ecoli-ATCC700926-rep1_09_2_fastqc.zip

about 1 month 340 kB

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Ecoli-ATCC700926-rep1_09_2_screen.html

about 1 month 3.36 MB

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Ecoli-ATCC700926-rep1_09_2_screen.png

about 1 month 6.08 kB

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Ecoli-ATCC700926-rep1_09_2_screen.txt

about 1 month 512 B

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Ecoli-ATCC700926-rep2_10_1_fastqc.html

about 1 month 559 kB

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Ecoli-ATCC700926-rep2_10_1_fastqc.zip

about 1 month 345 kB

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Ecoli-ATCC700926-rep2_10_1_screen.html

about 1 month 3.36 MB

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Ecoli-ATCC700926-rep2_10_1_screen.png

about 1 month 6.1 kB

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Ecoli-ATCC700926-rep2_10_1_screen.txt

about 1 month 513 B

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Ecoli-ATCC700926-rep2_10_2_fastqc.html

about 1 month 560 kB

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Ecoli-ATCC700926-rep2_10_2_fastqc.zip

about 1 month 345 kB

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Ecoli-ATCC700926-rep2_10_2_screen.html

about 1 month 3.36 MB

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Ecoli-ATCC700926-rep2_10_2_screen.png

about 1 month 6.11 kB

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Ecoli-ATCC700926-rep2_10_2_screen.txt

about 1 month 513 B

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Ecoli-ATCC700926-rep3_11_1_fastqc.html

about 1 month 553 kB

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Ecoli-ATCC700926-rep3_11_1_fastqc.zip

about 1 month 341 kB

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Ecoli-ATCC700926-rep3_11_1_screen.html

about 1 month 3.36 MB

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Ecoli-ATCC700926-rep3_11_1_screen.png

about 1 month 6.09 kB

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Ecoli-ATCC700926-rep3_11_1_screen.txt

about 1 month 513 B

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Ecoli-ATCC700926-rep3_11_2_fastqc.html

about 1 month 558 kB

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Ecoli-ATCC700926-rep3_11_2_fastqc.zip

about 1 month 339 kB

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Ecoli-ATCC700926-rep3_11_2_screen.html

about 1 month 3.36 MB

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Ecoli-ATCC700926-rep3_11_2_screen.png

about 1 month 6.08 kB

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Ecoli-ATCC700926-rep3_11_2_screen.txt

about 1 month 512 B

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Ecoli-ATCC700926-rep4_12_1_fastqc.html

about 1 month 549 kB

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Ecoli-ATCC700926-rep4_12_1_fastqc.zip

about 1 month 334 kB

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Ecoli-ATCC700926-rep4_12_1_screen.html

about 1 month 3.36 MB

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Ecoli-ATCC700926-rep4_12_1_screen.png

about 1 month 6.11 kB

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Ecoli-ATCC700926-rep4_12_1_screen.txt

about 1 month 513 B

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Ecoli-ATCC700926-rep4_12_2_fastqc.html

about 1 month 560 kB

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Ecoli-ATCC700926-rep4_12_2_fastqc.zip

about 1 month 342 kB

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Ecoli-ATCC700926-rep4_12_2_screen.html

about 1 month 3.36 MB

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Ecoli-ATCC700926-rep4_12_2_screen.png

about 1 month 6.11 kB

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Ecoli-ATCC700926-rep4_12_2_screen.txt

about 1 month 512 B

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Ecoli-ATCC700926-rep5_13_1_fastqc.html

about 1 month 557 kB

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Ecoli-ATCC700926-rep5_13_1_fastqc.zip

about 1 month 346 kB

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Ecoli-ATCC700926-rep5_13_1_screen.html

about 1 month 3.36 MB

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Ecoli-ATCC700926-rep5_13_1_screen.png

about 1 month 6.11 kB

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Ecoli-ATCC700926-rep5_13_1_screen.txt

about 1 month 513 B

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Ecoli-ATCC700926-rep5_13_2_fastqc.html

about 1 month 556 kB

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Ecoli-ATCC700926-rep5_13_2_fastqc.zip

about 1 month 345 kB

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Ecoli-ATCC700926-rep5_13_2_screen.html

about 1 month 3.36 MB

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Ecoli-ATCC700926-rep5_13_2_screen.png

about 1 month 6.12 kB

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Ecoli-ATCC700926-rep5_13_2_screen.txt

about 1 month 512 B

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Ecoli-ATCC700926-rep6_14_1_fastqc.html

about 1 month 552 kB

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Ecoli-ATCC700926-rep6_14_1_fastqc.zip

about 1 month 336 kB

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Ecoli-ATCC700926-rep6_14_1_screen.html

about 1 month 3.36 MB

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Ecoli-ATCC700926-rep6_14_1_screen.png

about 1 month 6.1 kB

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Ecoli-ATCC700926-rep6_14_1_screen.txt

about 1 month 512 B

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Ecoli-ATCC700926-rep6_14_2_fastqc.html

about 1 month 555 kB

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Ecoli-ATCC700926-rep6_14_2_fastqc.zip

about 1 month 335 kB

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Ecoli-ATCC700926-rep6_14_2_screen.html

about 1 month 3.36 MB

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Ecoli-ATCC700926-rep6_14_2_screen.png

about 1 month 6.1 kB

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Ecoli-ATCC700926-rep6_14_2_screen.txt

about 1 month 513 B

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Ecoli-ATCC700926-rep7_15_1_fastqc.html

about 1 month 561 kB

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Ecoli-ATCC700926-rep7_15_1_fastqc.zip

about 1 month 350 kB

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Ecoli-ATCC700926-rep7_15_1_screen.html

about 1 month 3.36 MB

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Ecoli-ATCC700926-rep7_15_1_screen.png

about 1 month 6.12 kB

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Ecoli-ATCC700926-rep7_15_1_screen.txt

about 1 month 513 B

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Ecoli-ATCC700926-rep7_15_2_fastqc.html

about 1 month 558 kB

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Ecoli-ATCC700926-rep7_15_2_fastqc.zip

about 1 month 342 kB

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Ecoli-ATCC700926-rep7_15_2_screen.html

about 1 month 3.36 MB

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Ecoli-ATCC700926-rep7_15_2_screen.png

about 1 month 6.13 kB

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Ecoli-ATCC700926-rep7_15_2_screen.txt

about 1 month 513 B

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Ecoli-ATCC700926-rep8_16_1_fastqc.html

about 1 month 559 kB

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Ecoli-ATCC700926-rep8_16_1_fastqc.zip

about 1 month 345 kB

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Ecoli-ATCC700926-rep8_16_1_screen.html

about 1 month 3.36 MB

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Ecoli-ATCC700926-rep8_16_1_screen.png

about 1 month 6.12 kB

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Ecoli-ATCC700926-rep8_16_1_screen.txt

about 1 month 513 B

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Ecoli-ATCC700926-rep8_16_2_fastqc.html

about 1 month 561 kB

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Ecoli-ATCC700926-rep8_16_2_fastqc.zip

about 1 month 345 kB

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Ecoli-ATCC700926-rep8_16_2_screen.html

about 1 month 3.36 MB

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Ecoli-ATCC700926-rep8_16_2_screen.png

about 1 month 6.14 kB

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Ecoli-ATCC700926-rep8_16_2_screen.txt

about 1 month 513 B

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Rsphaeroides-ATCC17023-rep1_17_1_fastqc.html

about 1 month 555 kB

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Rsphaeroides-ATCC17023-rep1_17_1_fastqc.zip

about 1 month 344 kB

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Rsphaeroides-ATCC17023-rep1_17_1_screen.html

about 1 month 3.36 MB

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Rsphaeroides-ATCC17023-rep1_17_1_screen.png

about 1 month 6.09 kB

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Rsphaeroides-ATCC17023-rep1_17_1_screen.txt

about 1 month 512 B

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Rsphaeroides-ATCC17023-rep1_17_2_fastqc.html

about 1 month 559 kB

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Rsphaeroides-ATCC17023-rep1_17_2_fastqc.zip

about 1 month 340 kB

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Rsphaeroides-ATCC17023-rep1_17_2_screen.html

about 1 month 3.36 MB

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Rsphaeroides-ATCC17023-rep1_17_2_screen.png

about 1 month 6.12 kB

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Rsphaeroides-ATCC17023-rep1_17_2_screen.txt

about 1 month 512 B

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Rsphaeroides-ATCC17023-rep2_18_1_fastqc.html

about 1 month 556 kB

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Rsphaeroides-ATCC17023-rep2_18_1_fastqc.zip

about 1 month 345 kB

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Rsphaeroides-ATCC17023-rep2_18_1_screen.html

about 1 month 3.36 MB

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Rsphaeroides-ATCC17023-rep2_18_1_screen.png

about 1 month 6.13 kB

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Rsphaeroides-ATCC17023-rep2_18_1_screen.txt

about 1 month 512 B

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Rsphaeroides-ATCC17023-rep2_18_2_fastqc.html

about 1 month 563 kB

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Rsphaeroides-ATCC17023-rep2_18_2_fastqc.zip

about 1 month 348 kB

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Rsphaeroides-ATCC17023-rep2_18_2_screen.html

about 1 month 3.36 MB

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Rsphaeroides-ATCC17023-rep2_18_2_screen.png

about 1 month 6.14 kB

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Rsphaeroides-ATCC17023-rep2_18_2_screen.txt

about 1 month 512 B

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Rsphaeroides-ATCC17023-rep3_19_1_fastqc.html

about 1 month 560 kB

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Rsphaeroides-ATCC17023-rep3_19_1_fastqc.zip

about 1 month 347 kB

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Rsphaeroides-ATCC17023-rep3_19_1_screen.html

about 1 month 3.36 MB

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Rsphaeroides-ATCC17023-rep3_19_1_screen.png

about 1 month 6.12 kB

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Rsphaeroides-ATCC17023-rep3_19_1_screen.txt

about 1 month 512 B

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Rsphaeroides-ATCC17023-rep3_19_2_fastqc.html

about 1 month 557 kB

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Rsphaeroides-ATCC17023-rep3_19_2_fastqc.zip

about 1 month 336 kB

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Rsphaeroides-ATCC17023-rep3_19_2_screen.html

about 1 month 3.36 MB

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Rsphaeroides-ATCC17023-rep3_19_2_screen.png

about 1 month 6.13 kB

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Rsphaeroides-ATCC17023-rep3_19_2_screen.txt

about 1 month 512 B

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Rsphaeroides-ATCC17023-rep4_20_1_fastqc.html

about 1 month 553 kB

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Rsphaeroides-ATCC17023-rep4_20_1_fastqc.zip

about 1 month 340 kB

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Rsphaeroides-ATCC17023-rep4_20_1_screen.html

about 1 month 3.36 MB

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Rsphaeroides-ATCC17023-rep4_20_1_screen.png

about 1 month 6.12 kB

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Rsphaeroides-ATCC17023-rep4_20_1_screen.txt

about 1 month 512 B

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Rsphaeroides-ATCC17023-rep4_20_2_fastqc.html

about 1 month 560 kB

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Rsphaeroides-ATCC17023-rep4_20_2_fastqc.zip

about 1 month 344 kB

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Rsphaeroides-ATCC17023-rep4_20_2_screen.html

about 1 month 3.36 MB

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