Description
Perform variant calling on a set of normal samples using mutect2 panel of normals mode. Group them into a genomicsdbworkspace using genomicsdbimport, then use this to create a panel of normals using createsomaticpanelofnormals.
Input
Name (Type)
Description
Pattern
An input channel containing the following files:
- input: One or more BAM/CRAM files
- input_index: The index/indices from the BAM/CRAM file(s)
- interval_file: An interval file to be used with the mutect call
Structure: [ meta, input, input_index, interval_file ]