bam_markduplicates_samtools

Samtools markduplicate SAM/BAM/CRAM file

markdupbamsamcram

Description

Samtools markduplicate SAM/BAM/CRAM file

name

description

pattern

BAM/CRAM/SAM file.

Structure: [ val(meta), path(bam) ]

*.{bam,cram,sam}

FASTA file and its index.

Structure: [ val(meta2), path(fasta), path(fai) ]

*.{fasta,fa,fai}

name

description

pattern

Sorted and markduplicate BAM/CRAM/SAM file.

Structure: [ val(meta), path(bam) ]

*.{bam,cram,sam}