Description

Samtools markduplicate SAM/BAM/CRAM file

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'test' ]

bam (file)

BAM/CRAM/SAM file

*.{bam,cram,sam}

fasta (file)

FASTA file

*.{fasta,fa}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'test' ]

bam (file)

Sorted and markduplicate BAM/CRAM/SAM file

*.{bam,cram,sam}

versions (file)

File containing software versions

versions.yml
included modules and subworkflows
samtools/collate samtools/fixmate samtools/sort samtools/markdup
maintainer
Github user priyanka-surana
get in touch
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