Demultiplex Illumina BCL data using bcl-convert or bcl2fastq
meta :map
Groovy Map containing sample information e.g. [ id:‘string’, lane: int ]
samplesheet :file
CSV file containing information about samples to be demultiplexed in Illumina SampleSheet format
flowcell :file
Directory or tar archive containing Illumina BCL data, sequencer output directory
demultiplexer :string
Which demultiplexer to use, bcl2fastq or bclconvert
Groovy Map containing sample information e.g. [ id:‘test’ ]
fastq :file
Demultiplexed fastq files
*.fastq.gz
reports :file
Demultiplexing reports
Reports/*
interop :file
InterOp files
InterOp/*
stats :file
Demultiplexing statistics (bcl2fastq only)
Stats/*
versions :file
File containing software versions
versions.yml
