Demultiplex Illumina BCL data using bcl-convert or bcl2fastq
meta
Groovy Map containing sample information e.g. [ id:‘string’, lane: int ]
samplesheet
CSV file containing information about samples to be demultiplexed in Illumina SampleSheet format
flowcell
Directory or tar archive containing Illumina BCL data, sequencer output directory
demultiplexer
Which demultiplexer to use, bcl2fastq or bclconvert
Groovy Map containing sample information e.g. [ id:‘test’ ]
fastq
Demultiplexed fastq files
*.fastq.gz
reports
Demultiplexing reports
Reports/*
interop
InterOp files
InterOp/*
stats
Demultiplexing statistics (bcl2fastq only)
Stats/*
versions
File containing software versions
versions.yml
