subworkflows/bed_scatter_bedtools

Scatters inputted BED files by the amount specified. The configuration in nextflow.config should be added to your modules.config for the subworkflow to work.

bedscatterbedtools

https://github.com/nf-core/modules/[...]/subworkflows/nf-core/bed_scatter_bedtools

Description

Scatters inputted BED files by the amount specified. The configuration in nextflow.config should be added to your modules.config for the subworkflow to work.

Input

Name (Type)

Description

Pattern

`ch_bed`

The input channel containing the BED file and an integer stating the amount of files it should be split into
Structure: [ val(meta), path(bed), val(scatter_count) ]

Output

Name (Type)

Description

Pattern

`scattered_beds`

One channel entry per scattered BED file (all BED files from the same source are transposed but contain the same meta)
Structure: [ val(meta), path(bed), val(scatter_count) ]

`versions`

Files containing software versions
Structure: [ path(versions.yml) ]

subworkflows/bed_scatter_bedtools

Description

Input

`ch_bed`

Output

`scattered_beds`

`versions`

included modules and subworkflows

maintainer

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