subworkflows/bedgraph_bedclip_bedgraphtobigwig

Convert bedgraph to bigwig with clip

bedgraphbigwigclipconversion

https://github.com/nf-core/modules/[...]/subworkflows/nf-core/bedgraph_bedclip_bedgraphtobigwig

Description

Convert bedgraph to bigwig with clip

Input

Name (Type)

Description

Pattern

`bedgraph` (file)

bedGraph file which should be converted

*.bedGraph

`sizes` (file)

File with chromosome sizes

*.sizes

Output

Name (Type)

Description

Pattern

`bigwig` (file)

bigWig coverage file relative to genes on the input file

.bigWig

`bedgraph` (file)

bedGraph file after clipping

*.bedGraph

`versions` (file)

File containing software versions

versions.yml