Input
Name (Type)
Description
Pattern
Structure: [ val(meta), path(fasta)]
File containing raw assembled contigs in FASTA format.
Output
Name (Type)
Description
Pattern
Structure: [ val(meta), path(csv) ]
CSV containing information which subcontig is assigned to which cluster
Structure: [ val(meta), path(csv) ]
CSV file containing untransformed PCA component values
Structure: [ val(meta), path(csv) ]
CSV file transformed PCA component values
Structure: [ val(meta), path(csv) ]
CSV file containing final cluster assignments of original input contigs
Structure: [ val(meta), path(fasta) ]
FASTA files containing CONCOCT predicted bin clusters, named numerically
by CONCOCT cluster ID