fasta_build_add_kraken2
KRAKEN2 build custom database subworkflow
metagenomicskraken2databasebuildcustom
Input
name:type
description
pattern
Channel containing a meta with a list of FASTAs to be built
Structure: [ val(meta), [ fasta1, fasta2, fasta3 ] ]
*.{fasta,fa,fna}
Channel containing a NCBI-style taxdump names file
Structure: [ names.dmp ]
names.dmp
Channel containing a NCBI-style taxdump nodes file
Structure: [ nodes.dmp ]
nodes.dmp
Channel containing a NCBI-style taxdump accession2taxid (acc2tax) file
Structure: [ accession2taxid_file ]
*.accession2taxid