fasta_consensus_autocycler

Generate consensus assemblies and assembly graphs from grouped contig FASTA files using autocycler

autocyclerconsensusassemblyfasta

Description

Generate consensus assemblies and assembly graphs from grouped contig FASTA files using autocycler

name

description

pattern

The input channel containing grouped contig FASTA files
Structure: [ val(meta), [ fasta, fasta, … ] ]

*.{fasta,fa,fna}

name

description

pattern

Channel containing consensus assembly FASTA files
Structure: [ val(meta), path(fasta) ]

*/consensus_assembly.fasta

Channel containing consensus assembly graphs
Structure: [ val(meta), path(gfa) ]

*/consensus_assembly.gfa