subworkflows/fastq_align_bwaaln
Align FASTQ files against reference genome with the bwa aln short-read aligner producing a sorted and indexed BAM files
bwaalnfastabwaalignmap
Description
Align FASTQ files against reference genome with the bwa aln short-read aligner producing a sorted and indexed BAM files
Input
Name (Type)
Description
Pattern
Structure: [ val(meta), path(fastq) ]
One or two FASTQ files for single or paired end data respectively.
Note: the subworkflow adds a new meta ID meta.id_index
that must
be used in prefix
to ensure unique file names. See the associated
nextflow.config file.