subworkflows/fastq_align_dna

Groovy Map containing sample information
e.g. [ id:‘test’ ]

List of input FastQ files of size 1 and 2 for single-end and paired-end data,
respectively.

Groovy Map containing reference information
e.g. [ id:‘test’ ]

Aligner genome index files

Groovy Map containing reference information
e.g. [ id:‘genome’ ]

Reference genome in fasta format

Aligner to use for alignment

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