Produces a contamination report from FastQ input after subsampling
meta :map
Groovy Map containing sample information e.g. [ id:‘test’, single_end
reads :file
List of input FastQ files of size 1 and 2 for single-end and paired-end data, respectively
sample_size :string
Number of reads to subsample for contamination detection.
report :file
Kraken2 contamination report
*.txt
versions :file
File containing software versions
versions.yml
