Produces a contamination report from FastQ input after subsampling
meta
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
reads
List of input FastQ files of size 1 and 2 for single-end and paired-end data, respectively
sample_size
Number of reads to subsample for contamination detection.
report
Kraken2 contamination report
*.txt
versions
File containing software versions
versions.yml
