Description

Download FASTQ sequencing reads from the NCBI’s Sequence Read Archive (SRA).

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

id (string)

SRA run identifier.

certificate (file)

Path to a JWT cart file used to access protected dbGAP data on SRA using the sra-toolkit

*.cart

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

reads (file)

Extracted FASTQ file or files if the sequencing reads are paired-end.

*.fastq.gz

versions (file)

File containing software versions

versions.yml
included in
fetchngs
authors
Github user Midnighter Github user drpatelh
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