Description

Download FASTQ sequencing reads from the NCBI’s Sequence Read Archive (SRA).

Input

name
description
pattern

meta

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

id

SRA run identifier.

certificate

Path to a JWT cart file used to access protected dbGAP data on SRA using the sra-toolkit

*.cart

Output

name
description
pattern

meta

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

reads

Extracted FASTQ file or files if the sequencing reads are paired-end.

*.fastq.gz

versions

File containing software versions

versions.yml