Generate statistics for short read sequencing data using multiple tools
ch_reads
List of input FastQ files of size 1 and 2 for single-end and paired-end data, respectively.
Structure: [ val(meta), path(fastq) ]
skip_fastqc
Skip fastqc process
skip_seqfu_check
Skip seqfu_check process
skip_seqfu_stats
Skip seqfu_stats process
skip_seqkit_stats
Skip seqkit_stats process
skip_seqtk_comp
Skip seqtk_comp process
fastqc_html
FastQC report
*_fastqc.html
fastqc_zip
FastQC report archive
*_fastqc.zip
seqfu_check
seqfu check tsv report
*.tsv
seqfu_stats
seqfu stats tsv report
seqfu_multiqc
seqfu stats MultiQC report
*_mqc.txt
seqkit_stats
seqkit stats report
seqtk_stats
seqtk comp TSV report summarising per-sequence length, base counts and GC content
*.seqtk_stats.tsv
