Description

Use nf-validation to initiate and validate a pipeline

Input

Name (Type)
Description
Pattern

Print help message and exit

workflow_command (string)

The command to run the workflow e.g. “nextflow run main.nf”

pre_help_text (string)

Text to print before the help message

post_help_text (string)

Text to print after the help message

validate_params (boolean)

Validate the parameters and error if invalid.

schema_filename (string)

The filename of the schema to validate against.

Output

Name (Type)
Description
Pattern

summary_params (file)

A Groovy map constructed from parameters.
Structure: [ val(meta), path(bam) ]

*.bam