Description

Use nf-validation to initiate and validate a pipeline

Input

name:type
description
pattern

Print help message and exit

workflow_command :string

The command to run the workflow e.g. “nextflow run main.nf”

pre_help_text :string

Text to print before the help message

post_help_text :string

Text to print after the help message

validate_params :boolean

Validate the parameters and error if invalid.

schema_filename :string

The filename of the schema to validate against.

Output

name:type
description
pattern

dummy_emit :boolean

Dummy emit to make nf-core subworkflows lint happy

included in
airrflow ampliseq bacass bamtofastq chipseq circrna datasync demo demultiplex denovotranscript detaxizer differentialabundance epitopeprediction fastquorum fetchngs funcscan isoseq mag magmap mcmicro meerpipe metaboigniter metapep methylarray mhcquant multiplesequencealign nanostring oncoanalyser pairgenomealign pangenome pixelator proteinfold rangeland raredisease readsimulator reportho riboseq rnadnavar rnafusion sarek scdownstream scnanoseq scrnaseq seqinspector spatialvi taxprofiler tbanalyzer tfactivity troughgraph
included modules and subworkflows
maintainers
Github user adamrtalbot
Github user maxulysse
get in touch
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