Perform annotation with ensemblvep and bgzip + tabix index the resulting VCF file
ch_vcf
vcf file to annotate Structure: [ val(meta), path(vcf), [path(custom_file1), path(custom_file2)… (optionnal)] ]
ch_fasta
Reference genome fasta file (optional) Structure: [ val(meta2), path(fasta) ]
val_genome
genome to use
val_species
species to use
val_cache_version
cache version to use
ch_cache
the root cache folder for ensemblvep (optional) Structure: [ val(meta3), path(cache) ]
ch_extra_files
any extra files needed by plugins for ensemblvep (optional) Structure: [ path(file1), path(file2)… ]
vcf_tbi
Compressed vcf file + tabix index Structure: [ val(meta), path(vcf), path(tbi) ]
json
json file Structure: [ val(meta), path(json) ]
tab
tab file Structure: [ val(meta), path(tab) ]
reports
html reports
*.html
versions
File containing software versions
versions.yml
