Perform annotation with snpEff and bgzip + tabix index the resulting VCF file
ch_vcf
vcf file Structure: [ val(meta), path(vcf) ]
val_snpeff_db
db version to use
ch_snpeff_cache
path to root cache folder for snpEff (optional) Structure: [ path(cache) ]
vcf_tbi
Compressed vcf file + tabix index Structure: [ val(meta), path(vcf), path(tbi) ]
reports
html reports Structure: [ path(html) ]
versions
Files containing software versions Structure: [ path(versions.yml) ]
