Introduction Usage Parameters Output Results Releases
  • Name Last Modified Size
    • artic_minion/ assembly/ fastp/ fastqc/ kraken2/ nanoplot/ pipeline_info/ pycoqc/ variants/
    CONTROL_01.classified.fastq.gz
    27 days 48 B
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    CONTROL_01.kraken2.classifiedreads.txt
    27 days 612 B
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    CONTROL_01.kraken2.report.txt
    27 days 30 B
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    CONTROL_01.unclassified.fastq.gz
    27 days 5.08 kB
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    SAMPLE_01.classified.fastq.gz
    27 days 728 kB
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    SAMPLE_01.kraken2.classifiedreads.txt
    27 days 489 kB
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    SAMPLE_01.kraken2.report.txt
    27 days 370 B
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    SAMPLE_01.unclassified.fastq.gz
    27 days 3.42 MB
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    SAMPLE_02.classified.fastq.gz
    27 days 1.89 kB
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    SAMPLE_02.kraken2.classifiedreads.txt
    27 days 18 MB
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    SAMPLE_02.kraken2.report.txt
    27 days 347 B
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    SAMPLE_02.unclassified.fastq.gz
    27 days 191 MB
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    SAMPLE_03.classified.fastq.gz
    27 days 55 kB
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    SAMPLE_03.kraken2.classifiedreads.txt
    27 days 2.56 MB
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    SAMPLE_03.kraken2.report.txt
    27 days 363 B
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    SAMPLE_03.unclassified.fastq.gz
    27 days 26.7 MB
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    SAMPLE_04.classified.fastq.gz
    27 days 691 B
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    SAMPLE_04.kraken2.classifiedreads.txt
    27 days 15 MB
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    SAMPLE_04.kraken2.report.txt
    27 days 347 B
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    SAMPLE_04.unclassified.fastq.gz
    27 days 160 MB
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    SAMPLE_05.classified.fastq.gz
    27 days 6.6 kB
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    SAMPLE_05.kraken2.classifiedreads.txt
    27 days 14 MB
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    SAMPLE_05.kraken2.report.txt
    27 days 356 B
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    SAMPLE_05.unclassified.fastq.gz
    27 days 149 MB
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    SAMPLE_06.classified.fastq.gz
    27 days 609 B
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    SAMPLE_06.kraken2.classifiedreads.txt
    27 days 17.4 MB
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    SAMPLE_06.kraken2.report.txt
    27 days 347 B
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    SAMPLE_06.unclassified.fastq.gz
    27 days 184 MB
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    SAMPLE_07.classified.fastq.gz
    27 days 5.51 kB
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    SAMPLE_07.kraken2.classifiedreads.txt
    27 days 16.1 MB
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    SAMPLE_07.kraken2.report.txt
    27 days 356 B
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    SAMPLE_07.unclassified.fastq.gz
    27 days 171 MB
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    SAMPLE_08.classified.fastq.gz
    27 days 25 kB
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    SAMPLE_08.kraken2.classifiedreads.txt
    27 days 8.02 MB
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    SAMPLE_08.kraken2.report.txt
    27 days 356 B
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    SAMPLE_08.unclassified.fastq.gz
    27 days 84.5 MB
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    SAMPLE_09.classified.fastq.gz
    27 days 91.9 kB
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    SAMPLE_09.kraken2.classifiedreads.txt
    27 days 591 kB
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    SAMPLE_09.kraken2.report.txt
    27 days 363 B
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    SAMPLE_09.unclassified.fastq.gz
    27 days 5.84 MB
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    SAMPLE_10.classified.fastq.gz
    27 days 10.7 kB
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    SAMPLE_10.kraken2.classifiedreads.txt
    27 days 9.31 MB
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    SAMPLE_10.kraken2.report.txt
    27 days 356 B
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    SAMPLE_10.unclassified.fastq.gz
    27 days 98.6 MB
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    SAMPLE_11.classified.fastq.gz
    27 days 3.56 kB
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    SAMPLE_11.kraken2.classifiedreads.txt
    27 days 10.3 MB
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    SAMPLE_11.kraken2.report.txt
    27 days 347 B
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    SAMPLE_11.unclassified.fastq.gz
    27 days 109 MB
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    SAMPLE_12.classified.fastq.gz
    27 days 13 kB
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    SAMPLE_12.kraken2.classifiedreads.txt
    27 days 11.5 MB
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    SAMPLE_12.kraken2.report.txt
    27 days 356 B
    Download file Copy file URL Copy S3 URL
    SAMPLE_12.unclassified.fastq.gz
    27 days 122 MB
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    SAMPLE_13.classified.fastq.gz
    27 days 32.6 kB
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    SAMPLE_13.kraken2.classifiedreads.txt
    27 days 42.5 kB
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    SAMPLE_13.kraken2.report.txt
    27 days 350 B
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    SAMPLE_13.unclassified.fastq.gz
    27 days 329 kB
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    SAMPLE_14.classified.fastq.gz
    27 days 16.6 kB
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    SAMPLE_14.kraken2.classifiedreads.txt
    27 days 11.5 MB
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    SAMPLE_14.kraken2.report.txt
    27 days 356 B
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    SAMPLE_14.unclassified.fastq.gz
    27 days 122 MB
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    SAMPLE_15.classified.fastq.gz
    27 days 94.3 kB
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    SAMPLE_15.kraken2.classifiedreads.txt
    27 days 6.09 MB
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    SAMPLE_15.kraken2.report.txt
    27 days 365 B
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    SAMPLE_15.unclassified.fastq.gz
    27 days 64.1 MB
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    SAMPLE_16.classified.fastq.gz
    27 days 4.53 kB
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    SAMPLE_16.kraken2.classifiedreads.txt
    27 days 12.4 MB
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    SAMPLE_16.kraken2.report.txt
    27 days 356 B
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    SAMPLE_16.unclassified.fastq.gz
    27 days 132 MB
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    SAMPLE_17.classified.fastq.gz
    27 days 66.4 kB
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    SAMPLE_17.kraken2.classifiedreads.txt
    27 days 753 kB
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    SAMPLE_17.kraken2.report.txt
    27 days 363 B
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    SAMPLE_17.unclassified.fastq.gz
    27 days 7.68 MB
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    SAMPLE_18.classified.fastq.gz
    27 days 3.9 kB
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    SAMPLE_18.kraken2.classifiedreads.txt
    27 days 15.7 MB
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    SAMPLE_18.kraken2.report.txt
    27 days 347 B
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    SAMPLE_18.unclassified.fastq.gz
    27 days 166 MB
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    SAMPLE_19.classified.fastq.gz
    27 days 227 kB
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    SAMPLE_19.kraken2.classifiedreads.txt
    27 days 198 kB
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    SAMPLE_19.kraken2.report.txt
    27 days 361 B
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    SAMPLE_19.unclassified.fastq.gz
    27 days 1.61 MB
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    SAMPLE_20.classified.fastq.gz
    27 days 180 kB
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    SAMPLE_20.kraken2.classifiedreads.txt
    27 days 213 kB
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    SAMPLE_20.kraken2.report.txt
    27 days 361 B
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    SAMPLE_20.unclassified.fastq.gz
    27 days 1.76 MB
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    SAMPLE_21.classified.fastq.gz
    27 days 68.9 kB
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    SAMPLE_21.kraken2.classifiedreads.txt
    27 days 61.7 kB
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    SAMPLE_21.kraken2.report.txt
    27 days 359 B
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    SAMPLE_21.unclassified.fastq.gz
    27 days 460 kB
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    SAMPLE_22.classified.fastq.gz
    27 days 128 kB
    Download file Copy file URL Copy S3 URL
    SAMPLE_22.kraken2.classifiedreads.txt
    27 days 105 kB
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    SAMPLE_22.kraken2.report.txt
    27 days 361 B
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    SAMPLE_22.unclassified.fastq.gz
    27 days 799 kB
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    SAMPLE_23.classified.fastq.gz
    27 days 79.8 kB
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    SAMPLE_23.kraken2.classifiedreads.txt
    27 days 58.7 kB
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    SAMPLE_23.kraken2.report.txt
    27 days 359 B
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    SAMPLE_23.unclassified.fastq.gz
    27 days 443 kB
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    SAMPLE_24.classified.fastq.gz
    27 days 605 B
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    SAMPLE_24.kraken2.classifiedreads.txt
    27 days 16.4 MB
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    SAMPLE_24.kraken2.report.txt
    27 days 347 B
    Download file Copy file URL Copy S3 URL
    SAMPLE_24.unclassified.fastq.gz
    27 days 174 MB
    Download file Copy file URL Copy S3 URL
    SAMPLE_25.classified.fastq.gz
    27 days 257 kB
    Download file Copy file URL Copy S3 URL
    SAMPLE_25.kraken2.classifiedreads.txt
    27 days 1.57 MB
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    SAMPLE_25.kraken2.report.txt
    27 days 363 B
    Download file Copy file URL Copy S3 URL
    SAMPLE_25.unclassified.fastq.gz
    27 days 16 MB
    Download file Copy file URL Copy S3 URL
    SAMPLE_26.classified.fastq.gz
    27 days 356 kB
    Download file Copy file URL Copy S3 URL
    SAMPLE_26.kraken2.classifiedreads.txt
    27 days 159 kB
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    SAMPLE_26.kraken2.report.txt
    27 days 361 B
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    SAMPLE_26.unclassified.fastq.gz
    27 days 921 kB
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    SAMPLE_27.classified.fastq.gz
    27 days 173 kB
    Download file Copy file URL Copy S3 URL
    SAMPLE_27.kraken2.classifiedreads.txt
    27 days 124 kB
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    SAMPLE_27.kraken2.report.txt
    27 days 361 B
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    SAMPLE_27.unclassified.fastq.gz
    27 days 882 kB
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    SAMPLE_28.classified.fastq.gz
    27 days 3.89 kB
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    SAMPLE_28.kraken2.classifiedreads.txt
    27 days 11.7 MB
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    SAMPLE_28.kraken2.report.txt
    27 days 347 B
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    SAMPLE_28.unclassified.fastq.gz
    27 days 123 MB
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    SAMPLE_29.classified.fastq.gz
    27 days 18.6 kB
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    SAMPLE_29.kraken2.classifiedreads.txt
    27 days 10.9 MB
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    SAMPLE_29.kraken2.report.txt
    27 days 356 B
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    SAMPLE_29.unclassified.fastq.gz
    27 days 115 MB
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    SAMPLE_30.classified.fastq.gz
    27 days 3.56 kB
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    SAMPLE_30.kraken2.classifiedreads.txt
    27 days 13 MB
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    SAMPLE_30.kraken2.report.txt
    27 days 347 B
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    SAMPLE_30.unclassified.fastq.gz
    27 days 137 MB
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    SAMPLE_31.classified.fastq.gz
    27 days 91.2 kB
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    SAMPLE_31.kraken2.classifiedreads.txt
    27 days 110 kB
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    SAMPLE_31.kraken2.report.txt
    27 days 361 B
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    SAMPLE_31.unclassified.fastq.gz
    27 days 938 kB
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    SAMPLE_32.classified.fastq.gz
    27 days 5.89 kB
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    SAMPLE_32.kraken2.classifiedreads.txt
    27 days 6.92 MB
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    SAMPLE_32.kraken2.report.txt
    27 days 356 B
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    SAMPLE_32.unclassified.fastq.gz
    27 days 73 MB
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    SAMPLE_33.classified.fastq.gz
    27 days 2.37 kB
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    SAMPLE_33.kraken2.classifiedreads.txt
    27 days 15.8 MB
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    SAMPLE_33.kraken2.report.txt
    27 days 347 B
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    SAMPLE_33.unclassified.fastq.gz
    27 days 167 MB
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    SAMPLE_34.classified.fastq.gz
    27 days 31.6 kB
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    SAMPLE_34.kraken2.classifiedreads.txt
    27 days 1.21 MB
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    SAMPLE_34.kraken2.report.txt
    27 days 354 B
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    SAMPLE_34.unclassified.fastq.gz
    27 days 12.6 MB
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    SAMPLE_35.classified.fastq.gz
    27 days 3.39 kB
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    SAMPLE_35.kraken2.classifiedreads.txt
    27 days 14 MB
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    SAMPLE_35.kraken2.report.txt
    27 days 347 B
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    SAMPLE_35.unclassified.fastq.gz
    27 days 147 MB
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    SAMPLE_36.classified.fastq.gz
    27 days 75.5 kB
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    SAMPLE_36.kraken2.classifiedreads.txt
    27 days 2.13 MB
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    SAMPLE_36.kraken2.report.txt
    27 days 363 B
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    SAMPLE_36.unclassified.fastq.gz
    27 days 22.1 MB
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    SAMPLE_37.classified.fastq.gz
    27 days 1.39 kB
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    SAMPLE_37.kraken2.classifiedreads.txt
    27 days 11.7 MB
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    SAMPLE_37.kraken2.report.txt
    27 days 347 B
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    SAMPLE_37.unclassified.fastq.gz
    27 days 124 MB
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    SAMPLE_38.classified.fastq.gz
    27 days 89.4 kB
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    SAMPLE_38.kraken2.classifiedreads.txt
    27 days 6.59 MB
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    SAMPLE_38.kraken2.report.txt
    27 days 365 B
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    SAMPLE_38.unclassified.fastq.gz
    27 days 69.2 MB
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    SAMPLE_39.classified.fastq.gz
    27 days 68.4 kB
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    SAMPLE_39.kraken2.classifiedreads.txt
    27 days 29.5 kB
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    SAMPLE_39.kraken2.report.txt
    27 days 359 B
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    SAMPLE_39.unclassified.fastq.gz
    27 days 143 kB
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    SAMPLE_40.classified.fastq.gz
    27 days 257 kB
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    SAMPLE_40.kraken2.classifiedreads.txt
    27 days 393 kB
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    SAMPLE_40.kraken2.report.txt
    27 days 361 B
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    SAMPLE_40.unclassified.fastq.gz
    27 days 3.54 MB
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    SAMPLE_41.classified.fastq.gz
    27 days 2.37 kB
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    SAMPLE_41.kraken2.classifiedreads.txt
    27 days 14.5 MB
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    SAMPLE_41.kraken2.report.txt
    27 days 347 B
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    SAMPLE_41.unclassified.fastq.gz
    27 days 154 MB
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    SAMPLE_42.classified.fastq.gz
    27 days 22.5 kB
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    SAMPLE_42.kraken2.classifiedreads.txt
    27 days 12.3 MB
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    SAMPLE_42.kraken2.report.txt
    27 days 356 B
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    SAMPLE_42.unclassified.fastq.gz
    27 days 130 MB
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    SAMPLE_43.classified.fastq.gz
    27 days 29.2 kB
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    SAMPLE_43.kraken2.classifiedreads.txt
    27 days 10.6 MB
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    SAMPLE_43.kraken2.report.txt
    27 days 356 B
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    SAMPLE_43.unclassified.fastq.gz
    27 days 112 MB
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    SAMPLE_44.classified.fastq.gz
    27 days 167 kB
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    SAMPLE_44.kraken2.classifiedreads.txt
    27 days 2.66 MB
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    SAMPLE_44.kraken2.report.txt
    27 days 363 B
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    SAMPLE_44.unclassified.fastq.gz
    27 days 27.5 MB
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    SAMPLE_45.classified.fastq.gz
    27 days 3.46 kB
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    SAMPLE_45.kraken2.classifiedreads.txt
    27 days 9.16 MB
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    SAMPLE_45.kraken2.report.txt
    27 days 347 B
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    SAMPLE_45.unclassified.fastq.gz
    27 days 96.6 MB
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    SAMPLE_46.classified.fastq.gz
    27 days 372 kB
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    SAMPLE_46.kraken2.classifiedreads.txt
    27 days 1.41 MB
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    SAMPLE_46.kraken2.report.txt
    27 days 363 B
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    SAMPLE_46.unclassified.fastq.gz
    27 days 14 MB
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    SAMPLE_47.classified.fastq.gz
    27 days 3.33 kB
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    SAMPLE_47.kraken2.classifiedreads.txt
    27 days 14.4 MB
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    SAMPLE_47.kraken2.report.txt
    27 days 347 B
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    SAMPLE_47.unclassified.fastq.gz
    27 days 153 MB
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    SAMPLE_48.classified.fastq.gz
    27 days 84.8 kB
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    SAMPLE_48.kraken2.classifiedreads.txt
    27 days 7.38 MB
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    SAMPLE_48.kraken2.report.txt
    27 days 365 B
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    SAMPLE_48.unclassified.fastq.gz
    27 days 77.7 MB
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