nf-core/viralrecon

Assembly and intrahost/low-frequency variant calling for viral samples

ampliconarticassemblycovid-19covid19illuminalong-read-sequencingmetagenomicsnanoporeontoxford-nanoporesars-cov-2variant-callingviralvirus

Launch version 3.0.0 https://github.com/nf-core/viralrecon

NameLast ModifiedSize

artic_minion/assembly/fastp/fastqc/kraken2/nanoplot/pipeline_info/pycoqc/variants/

CONTROL_01.classified.fastq.gz

about 1 year48 B

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CONTROL_01.kraken2.classifiedreads.txt

about 1 year612 B

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CONTROL_01.kraken2.report.txt

about 1 year30 B

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CONTROL_01.unclassified.fastq.gz

about 1 year5.08 kB

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SAMPLE_01.classified.fastq.gz

about 1 year728 kB

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SAMPLE_01.kraken2.classifiedreads.txt

about 1 year489 kB

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SAMPLE_01.kraken2.report.txt

about 1 year370 B

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SAMPLE_01.unclassified.fastq.gz

about 1 year3.42 MB

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SAMPLE_02.classified.fastq.gz

about 1 year1.89 kB

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SAMPLE_02.kraken2.classifiedreads.txt

about 1 year18 MB

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SAMPLE_02.kraken2.report.txt

about 1 year347 B

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SAMPLE_02.unclassified.fastq.gz

about 1 year191 MB

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SAMPLE_03.classified.fastq.gz

about 1 year55 kB

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SAMPLE_03.kraken2.classifiedreads.txt

about 1 year2.56 MB

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SAMPLE_03.kraken2.report.txt

about 1 year363 B

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SAMPLE_03.unclassified.fastq.gz

about 1 year26.7 MB

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SAMPLE_04.classified.fastq.gz

about 1 year691 B

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SAMPLE_04.kraken2.classifiedreads.txt

about 1 year15 MB

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SAMPLE_04.kraken2.report.txt

about 1 year347 B

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SAMPLE_04.unclassified.fastq.gz

about 1 year160 MB

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SAMPLE_05.classified.fastq.gz

about 1 year6.6 kB

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SAMPLE_05.kraken2.classifiedreads.txt

about 1 year14 MB

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SAMPLE_05.kraken2.report.txt

about 1 year356 B

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SAMPLE_05.unclassified.fastq.gz

about 1 year149 MB

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SAMPLE_06.classified.fastq.gz

about 1 year609 B

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SAMPLE_06.kraken2.classifiedreads.txt

about 1 year17.4 MB

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SAMPLE_06.kraken2.report.txt

about 1 year347 B

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SAMPLE_06.unclassified.fastq.gz

about 1 year184 MB

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SAMPLE_07.classified.fastq.gz

about 1 year5.51 kB

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SAMPLE_07.kraken2.classifiedreads.txt

about 1 year16.1 MB

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SAMPLE_07.kraken2.report.txt

about 1 year356 B

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SAMPLE_07.unclassified.fastq.gz

about 1 year171 MB

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SAMPLE_08.classified.fastq.gz

about 1 year25 kB

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SAMPLE_08.kraken2.classifiedreads.txt

about 1 year8.02 MB

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SAMPLE_08.kraken2.report.txt

about 1 year356 B

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SAMPLE_08.unclassified.fastq.gz

about 1 year84.5 MB

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SAMPLE_09.classified.fastq.gz

about 1 year91.9 kB

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SAMPLE_09.kraken2.classifiedreads.txt

about 1 year591 kB

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SAMPLE_09.kraken2.report.txt

about 1 year363 B

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SAMPLE_09.unclassified.fastq.gz

about 1 year5.84 MB

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SAMPLE_10.classified.fastq.gz

about 1 year10.7 kB

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SAMPLE_10.kraken2.classifiedreads.txt

about 1 year9.31 MB

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SAMPLE_10.kraken2.report.txt

about 1 year356 B

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SAMPLE_10.unclassified.fastq.gz

about 1 year98.6 MB

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SAMPLE_11.classified.fastq.gz

about 1 year3.56 kB

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SAMPLE_11.kraken2.classifiedreads.txt

about 1 year10.3 MB

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SAMPLE_11.kraken2.report.txt

about 1 year347 B

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SAMPLE_11.unclassified.fastq.gz

about 1 year109 MB

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SAMPLE_12.classified.fastq.gz

about 1 year13 kB

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SAMPLE_12.kraken2.classifiedreads.txt

about 1 year11.5 MB

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SAMPLE_12.kraken2.report.txt

about 1 year356 B

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SAMPLE_12.unclassified.fastq.gz

about 1 year122 MB

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SAMPLE_13.classified.fastq.gz

about 1 year32.6 kB

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SAMPLE_13.kraken2.classifiedreads.txt

about 1 year42.5 kB

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SAMPLE_13.kraken2.report.txt

about 1 year350 B

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SAMPLE_13.unclassified.fastq.gz

about 1 year329 kB

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SAMPLE_14.classified.fastq.gz

about 1 year16.6 kB

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SAMPLE_14.kraken2.classifiedreads.txt

about 1 year11.5 MB

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SAMPLE_14.kraken2.report.txt

about 1 year356 B

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SAMPLE_14.unclassified.fastq.gz

about 1 year122 MB

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SAMPLE_15.classified.fastq.gz

about 1 year94.3 kB

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SAMPLE_15.kraken2.classifiedreads.txt

about 1 year6.09 MB

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SAMPLE_15.kraken2.report.txt

about 1 year365 B

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SAMPLE_15.unclassified.fastq.gz

about 1 year64.1 MB

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SAMPLE_16.classified.fastq.gz

about 1 year4.53 kB

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SAMPLE_16.kraken2.classifiedreads.txt

about 1 year12.4 MB

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SAMPLE_16.kraken2.report.txt

about 1 year356 B

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SAMPLE_16.unclassified.fastq.gz

about 1 year132 MB

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SAMPLE_17.classified.fastq.gz

about 1 year66.4 kB

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SAMPLE_17.kraken2.classifiedreads.txt

about 1 year753 kB

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SAMPLE_17.kraken2.report.txt

about 1 year363 B

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SAMPLE_17.unclassified.fastq.gz

about 1 year7.68 MB

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SAMPLE_18.classified.fastq.gz

about 1 year3.9 kB

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SAMPLE_18.kraken2.classifiedreads.txt

about 1 year15.7 MB

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SAMPLE_18.kraken2.report.txt

about 1 year347 B

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SAMPLE_18.unclassified.fastq.gz

about 1 year166 MB

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SAMPLE_19.classified.fastq.gz

about 1 year227 kB

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SAMPLE_19.kraken2.classifiedreads.txt

about 1 year198 kB

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SAMPLE_19.kraken2.report.txt

about 1 year361 B

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SAMPLE_19.unclassified.fastq.gz

about 1 year1.61 MB

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SAMPLE_20.classified.fastq.gz

about 1 year180 kB

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SAMPLE_20.kraken2.classifiedreads.txt

about 1 year213 kB

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SAMPLE_20.kraken2.report.txt

about 1 year361 B

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SAMPLE_20.unclassified.fastq.gz

about 1 year1.76 MB

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SAMPLE_21.classified.fastq.gz

about 1 year68.9 kB

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SAMPLE_21.kraken2.classifiedreads.txt

about 1 year61.7 kB

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SAMPLE_21.kraken2.report.txt

about 1 year359 B

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SAMPLE_21.unclassified.fastq.gz

about 1 year460 kB

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SAMPLE_22.classified.fastq.gz

about 1 year128 kB

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SAMPLE_22.kraken2.classifiedreads.txt

about 1 year105 kB

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SAMPLE_22.kraken2.report.txt

about 1 year361 B

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SAMPLE_22.unclassified.fastq.gz

about 1 year799 kB

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SAMPLE_23.classified.fastq.gz

about 1 year79.8 kB

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SAMPLE_23.kraken2.classifiedreads.txt

about 1 year58.7 kB

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SAMPLE_23.kraken2.report.txt

about 1 year359 B

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SAMPLE_23.unclassified.fastq.gz

about 1 year443 kB

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SAMPLE_24.classified.fastq.gz

about 1 year605 B

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SAMPLE_24.kraken2.classifiedreads.txt

about 1 year16.4 MB

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SAMPLE_24.kraken2.report.txt

about 1 year347 B

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SAMPLE_24.unclassified.fastq.gz

about 1 year174 MB

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SAMPLE_25.classified.fastq.gz

about 1 year257 kB

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SAMPLE_25.kraken2.classifiedreads.txt

about 1 year1.57 MB

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SAMPLE_25.kraken2.report.txt

about 1 year363 B

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SAMPLE_25.unclassified.fastq.gz

about 1 year16 MB

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SAMPLE_26.classified.fastq.gz

about 1 year356 kB

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SAMPLE_26.kraken2.classifiedreads.txt

about 1 year159 kB

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SAMPLE_26.kraken2.report.txt

about 1 year361 B

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SAMPLE_26.unclassified.fastq.gz

about 1 year921 kB

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SAMPLE_27.classified.fastq.gz

about 1 year173 kB

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SAMPLE_27.kraken2.classifiedreads.txt

about 1 year124 kB

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SAMPLE_27.kraken2.report.txt

about 1 year361 B

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SAMPLE_27.unclassified.fastq.gz

about 1 year882 kB

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SAMPLE_28.classified.fastq.gz

about 1 year3.89 kB

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SAMPLE_28.kraken2.classifiedreads.txt

about 1 year11.7 MB

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SAMPLE_28.kraken2.report.txt

about 1 year347 B

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SAMPLE_28.unclassified.fastq.gz

about 1 year123 MB

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SAMPLE_29.classified.fastq.gz

about 1 year18.6 kB

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SAMPLE_29.kraken2.classifiedreads.txt

about 1 year10.9 MB

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SAMPLE_29.kraken2.report.txt

about 1 year356 B

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SAMPLE_29.unclassified.fastq.gz

about 1 year115 MB

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SAMPLE_30.classified.fastq.gz

about 1 year3.56 kB

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SAMPLE_30.kraken2.classifiedreads.txt

about 1 year13 MB

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SAMPLE_30.kraken2.report.txt

about 1 year347 B

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SAMPLE_30.unclassified.fastq.gz

about 1 year137 MB

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SAMPLE_31.classified.fastq.gz

about 1 year91.2 kB

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SAMPLE_31.kraken2.classifiedreads.txt

about 1 year110 kB

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SAMPLE_31.kraken2.report.txt

about 1 year361 B

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SAMPLE_31.unclassified.fastq.gz

about 1 year938 kB

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SAMPLE_32.classified.fastq.gz

about 1 year5.89 kB

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SAMPLE_32.kraken2.classifiedreads.txt

about 1 year6.92 MB

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SAMPLE_32.kraken2.report.txt

about 1 year356 B

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SAMPLE_32.unclassified.fastq.gz

about 1 year73 MB

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SAMPLE_33.classified.fastq.gz

about 1 year2.37 kB

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SAMPLE_33.kraken2.classifiedreads.txt

about 1 year15.8 MB

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SAMPLE_33.kraken2.report.txt

about 1 year347 B

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SAMPLE_33.unclassified.fastq.gz

about 1 year167 MB

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SAMPLE_34.classified.fastq.gz

about 1 year31.6 kB

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SAMPLE_34.kraken2.classifiedreads.txt

about 1 year1.21 MB

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SAMPLE_34.kraken2.report.txt

about 1 year354 B

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SAMPLE_34.unclassified.fastq.gz

about 1 year12.6 MB

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SAMPLE_35.classified.fastq.gz

about 1 year3.39 kB

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SAMPLE_35.kraken2.classifiedreads.txt

about 1 year14 MB

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SAMPLE_35.kraken2.report.txt

about 1 year347 B

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SAMPLE_35.unclassified.fastq.gz

about 1 year147 MB

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SAMPLE_36.classified.fastq.gz

about 1 year75.5 kB

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SAMPLE_36.kraken2.classifiedreads.txt

about 1 year2.13 MB

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SAMPLE_36.kraken2.report.txt

about 1 year363 B

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SAMPLE_36.unclassified.fastq.gz

about 1 year22.1 MB

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SAMPLE_37.classified.fastq.gz

about 1 year1.39 kB

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SAMPLE_37.kraken2.classifiedreads.txt

about 1 year11.7 MB

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SAMPLE_37.kraken2.report.txt

about 1 year347 B

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SAMPLE_37.unclassified.fastq.gz

about 1 year124 MB

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SAMPLE_38.classified.fastq.gz

about 1 year89.4 kB

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SAMPLE_38.kraken2.classifiedreads.txt

about 1 year6.59 MB

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SAMPLE_38.kraken2.report.txt

about 1 year365 B

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SAMPLE_38.unclassified.fastq.gz

about 1 year69.2 MB

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SAMPLE_39.classified.fastq.gz

about 1 year68.4 kB

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SAMPLE_39.kraken2.classifiedreads.txt

about 1 year29.5 kB

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SAMPLE_39.kraken2.report.txt

about 1 year359 B

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SAMPLE_39.unclassified.fastq.gz

about 1 year143 kB

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SAMPLE_40.classified.fastq.gz

about 1 year257 kB

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SAMPLE_40.kraken2.classifiedreads.txt

about 1 year393 kB

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SAMPLE_40.kraken2.report.txt

about 1 year361 B

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SAMPLE_40.unclassified.fastq.gz

about 1 year3.54 MB

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SAMPLE_41.classified.fastq.gz

about 1 year2.37 kB

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SAMPLE_41.kraken2.classifiedreads.txt

about 1 year14.5 MB

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SAMPLE_41.kraken2.report.txt

about 1 year347 B

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SAMPLE_41.unclassified.fastq.gz

about 1 year154 MB

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SAMPLE_42.classified.fastq.gz

about 1 year22.5 kB

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SAMPLE_42.kraken2.classifiedreads.txt

about 1 year12.3 MB

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SAMPLE_42.kraken2.report.txt

about 1 year356 B

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SAMPLE_42.unclassified.fastq.gz

about 1 year130 MB

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SAMPLE_43.classified.fastq.gz

about 1 year29.2 kB

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SAMPLE_43.kraken2.classifiedreads.txt

about 1 year10.6 MB

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SAMPLE_43.kraken2.report.txt

about 1 year356 B

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SAMPLE_43.unclassified.fastq.gz

about 1 year112 MB

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SAMPLE_44.classified.fastq.gz

about 1 year167 kB

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SAMPLE_44.kraken2.classifiedreads.txt

about 1 year2.66 MB

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SAMPLE_44.kraken2.report.txt

about 1 year363 B

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SAMPLE_44.unclassified.fastq.gz

about 1 year27.5 MB

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SAMPLE_45.classified.fastq.gz

about 1 year3.46 kB

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SAMPLE_45.kraken2.classifiedreads.txt

about 1 year9.16 MB

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SAMPLE_45.kraken2.report.txt

about 1 year347 B

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SAMPLE_45.unclassified.fastq.gz

about 1 year96.6 MB

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SAMPLE_46.classified.fastq.gz

about 1 year372 kB

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SAMPLE_46.kraken2.classifiedreads.txt

about 1 year1.41 MB

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SAMPLE_46.kraken2.report.txt

about 1 year363 B

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SAMPLE_46.unclassified.fastq.gz

about 1 year14 MB

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SAMPLE_47.classified.fastq.gz

about 1 year3.33 kB

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SAMPLE_47.kraken2.classifiedreads.txt

about 1 year14.4 MB

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SAMPLE_47.kraken2.report.txt

about 1 year347 B

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SAMPLE_47.unclassified.fastq.gz

about 1 year153 MB

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SAMPLE_48.classified.fastq.gz

about 1 year84.8 kB

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SAMPLE_48.kraken2.classifiedreads.txt

about 1 year7.38 MB

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SAMPLE_48.kraken2.report.txt

about 1 year365 B

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SAMPLE_48.unclassified.fastq.gz

about 1 year77.7 MB

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