nf-core/viralrecon

Assembly and intrahost/low-frequency variant calling for viral samples

ampliconarticassemblycovid-19covid19illuminalong-read-sequencingmetagenomicsnanoporeontoxford-nanoporesars-cov-2variant-callingviralvirus

Launch version 3.0.0 https://github.com/nf-core/viralrecon

NameLast ModifiedSize

artic_minion/assembly/fastp/fastqc/kraken2/nanoplot/pipeline_info/pycoqc/variants/

CONTROL_01.classified.fastq.gz

11 months48 B

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CONTROL_01.kraken2.classifiedreads.txt

11 months612 B

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CONTROL_01.kraken2.report.txt

11 months30 B

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CONTROL_01.unclassified.fastq.gz

11 months5.08 kB

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SAMPLE_01.classified.fastq.gz

11 months728 kB

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SAMPLE_01.kraken2.classifiedreads.txt

11 months489 kB

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SAMPLE_01.kraken2.report.txt

11 months370 B

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SAMPLE_01.unclassified.fastq.gz

11 months3.42 MB

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SAMPLE_02.classified.fastq.gz

11 months1.89 kB

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SAMPLE_02.kraken2.classifiedreads.txt

11 months18 MB

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SAMPLE_02.kraken2.report.txt

11 months347 B

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SAMPLE_02.unclassified.fastq.gz

11 months191 MB

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SAMPLE_03.classified.fastq.gz

11 months55 kB

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SAMPLE_03.kraken2.classifiedreads.txt

11 months2.56 MB

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SAMPLE_03.kraken2.report.txt

11 months363 B

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SAMPLE_03.unclassified.fastq.gz

11 months26.7 MB

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SAMPLE_04.classified.fastq.gz

11 months691 B

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SAMPLE_04.kraken2.classifiedreads.txt

11 months15 MB

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SAMPLE_04.kraken2.report.txt

11 months347 B

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SAMPLE_04.unclassified.fastq.gz

11 months160 MB

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SAMPLE_05.classified.fastq.gz

11 months6.6 kB

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SAMPLE_05.kraken2.classifiedreads.txt

11 months14 MB

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SAMPLE_05.kraken2.report.txt

11 months356 B

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SAMPLE_05.unclassified.fastq.gz

11 months149 MB

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SAMPLE_06.classified.fastq.gz

11 months609 B

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SAMPLE_06.kraken2.classifiedreads.txt

11 months17.4 MB

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SAMPLE_06.kraken2.report.txt

11 months347 B

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SAMPLE_06.unclassified.fastq.gz

11 months184 MB

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SAMPLE_07.classified.fastq.gz

11 months5.51 kB

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SAMPLE_07.kraken2.classifiedreads.txt

11 months16.1 MB

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SAMPLE_07.kraken2.report.txt

11 months356 B

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SAMPLE_07.unclassified.fastq.gz

11 months171 MB

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SAMPLE_08.classified.fastq.gz

11 months25 kB

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SAMPLE_08.kraken2.classifiedreads.txt

11 months8.02 MB

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SAMPLE_08.kraken2.report.txt

11 months356 B

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SAMPLE_08.unclassified.fastq.gz

11 months84.5 MB

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SAMPLE_09.classified.fastq.gz

11 months91.9 kB

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SAMPLE_09.kraken2.classifiedreads.txt

11 months591 kB

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SAMPLE_09.kraken2.report.txt

11 months363 B

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SAMPLE_09.unclassified.fastq.gz

11 months5.84 MB

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SAMPLE_10.classified.fastq.gz

11 months10.7 kB

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SAMPLE_10.kraken2.classifiedreads.txt

11 months9.31 MB

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SAMPLE_10.kraken2.report.txt

11 months356 B

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SAMPLE_10.unclassified.fastq.gz

11 months98.6 MB

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SAMPLE_11.classified.fastq.gz

11 months3.56 kB

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SAMPLE_11.kraken2.classifiedreads.txt

11 months10.3 MB

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SAMPLE_11.kraken2.report.txt

11 months347 B

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SAMPLE_11.unclassified.fastq.gz

11 months109 MB

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SAMPLE_12.classified.fastq.gz

11 months13 kB

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SAMPLE_12.kraken2.classifiedreads.txt

11 months11.5 MB

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SAMPLE_12.kraken2.report.txt

11 months356 B

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SAMPLE_12.unclassified.fastq.gz

11 months122 MB

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SAMPLE_13.classified.fastq.gz

11 months32.6 kB

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SAMPLE_13.kraken2.classifiedreads.txt

11 months42.5 kB

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SAMPLE_13.kraken2.report.txt

11 months350 B

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SAMPLE_13.unclassified.fastq.gz

11 months329 kB

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SAMPLE_14.classified.fastq.gz

11 months16.6 kB

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SAMPLE_14.kraken2.classifiedreads.txt

11 months11.5 MB

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SAMPLE_14.kraken2.report.txt

11 months356 B

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SAMPLE_14.unclassified.fastq.gz

11 months122 MB

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SAMPLE_15.classified.fastq.gz

11 months94.3 kB

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SAMPLE_15.kraken2.classifiedreads.txt

11 months6.09 MB

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SAMPLE_15.kraken2.report.txt

11 months365 B

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SAMPLE_15.unclassified.fastq.gz

11 months64.1 MB

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SAMPLE_16.classified.fastq.gz

11 months4.53 kB

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SAMPLE_16.kraken2.classifiedreads.txt

11 months12.4 MB

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SAMPLE_16.kraken2.report.txt

11 months356 B

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SAMPLE_16.unclassified.fastq.gz

11 months132 MB

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SAMPLE_17.classified.fastq.gz

11 months66.4 kB

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SAMPLE_17.kraken2.classifiedreads.txt

11 months753 kB

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SAMPLE_17.kraken2.report.txt

11 months363 B

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SAMPLE_17.unclassified.fastq.gz

11 months7.68 MB

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SAMPLE_18.classified.fastq.gz

11 months3.9 kB

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SAMPLE_18.kraken2.classifiedreads.txt

11 months15.7 MB

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SAMPLE_18.kraken2.report.txt

11 months347 B

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SAMPLE_18.unclassified.fastq.gz

11 months166 MB

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SAMPLE_19.classified.fastq.gz

11 months227 kB

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SAMPLE_19.kraken2.classifiedreads.txt

11 months198 kB

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SAMPLE_19.kraken2.report.txt

11 months361 B

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SAMPLE_19.unclassified.fastq.gz

11 months1.61 MB

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SAMPLE_20.classified.fastq.gz

11 months180 kB

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SAMPLE_20.kraken2.classifiedreads.txt

11 months213 kB

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SAMPLE_20.kraken2.report.txt

11 months361 B

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SAMPLE_20.unclassified.fastq.gz

11 months1.76 MB

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SAMPLE_21.classified.fastq.gz

11 months68.9 kB

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SAMPLE_21.kraken2.classifiedreads.txt

11 months61.7 kB

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SAMPLE_21.kraken2.report.txt

11 months359 B

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SAMPLE_21.unclassified.fastq.gz

11 months460 kB

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SAMPLE_22.classified.fastq.gz

11 months128 kB

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SAMPLE_22.kraken2.classifiedreads.txt

11 months105 kB

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SAMPLE_22.kraken2.report.txt

11 months361 B

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SAMPLE_22.unclassified.fastq.gz

11 months799 kB

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SAMPLE_23.classified.fastq.gz

11 months79.8 kB

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SAMPLE_23.kraken2.classifiedreads.txt

11 months58.7 kB

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SAMPLE_23.kraken2.report.txt

11 months359 B

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SAMPLE_23.unclassified.fastq.gz

11 months443 kB

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SAMPLE_24.classified.fastq.gz

11 months605 B

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SAMPLE_24.kraken2.classifiedreads.txt

11 months16.4 MB

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SAMPLE_24.kraken2.report.txt

11 months347 B

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SAMPLE_24.unclassified.fastq.gz

11 months174 MB

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SAMPLE_25.classified.fastq.gz

11 months257 kB

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SAMPLE_25.kraken2.classifiedreads.txt

11 months1.57 MB

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SAMPLE_25.kraken2.report.txt

11 months363 B

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SAMPLE_25.unclassified.fastq.gz

11 months16 MB

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SAMPLE_26.classified.fastq.gz

11 months356 kB

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SAMPLE_26.kraken2.classifiedreads.txt

11 months159 kB

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SAMPLE_26.kraken2.report.txt

11 months361 B

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SAMPLE_26.unclassified.fastq.gz

11 months921 kB

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SAMPLE_27.classified.fastq.gz

11 months173 kB

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SAMPLE_27.kraken2.classifiedreads.txt

11 months124 kB

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SAMPLE_27.kraken2.report.txt

11 months361 B

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SAMPLE_27.unclassified.fastq.gz

11 months882 kB

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SAMPLE_28.classified.fastq.gz

11 months3.89 kB

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SAMPLE_28.kraken2.classifiedreads.txt

11 months11.7 MB

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SAMPLE_28.kraken2.report.txt

11 months347 B

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SAMPLE_28.unclassified.fastq.gz

11 months123 MB

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SAMPLE_29.classified.fastq.gz

11 months18.6 kB

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SAMPLE_29.kraken2.classifiedreads.txt

11 months10.9 MB

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SAMPLE_29.kraken2.report.txt

11 months356 B

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SAMPLE_29.unclassified.fastq.gz

11 months115 MB

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SAMPLE_30.classified.fastq.gz

11 months3.56 kB

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SAMPLE_30.kraken2.classifiedreads.txt

11 months13 MB

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SAMPLE_30.kraken2.report.txt

11 months347 B

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SAMPLE_30.unclassified.fastq.gz

11 months137 MB

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SAMPLE_31.classified.fastq.gz

11 months91.2 kB

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SAMPLE_31.kraken2.classifiedreads.txt

11 months110 kB

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SAMPLE_31.kraken2.report.txt

11 months361 B

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SAMPLE_31.unclassified.fastq.gz

11 months938 kB

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SAMPLE_32.classified.fastq.gz

11 months5.89 kB

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SAMPLE_32.kraken2.classifiedreads.txt

11 months6.92 MB

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SAMPLE_32.kraken2.report.txt

11 months356 B

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SAMPLE_32.unclassified.fastq.gz

11 months73 MB

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SAMPLE_33.classified.fastq.gz

11 months2.37 kB

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SAMPLE_33.kraken2.classifiedreads.txt

11 months15.8 MB

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SAMPLE_33.kraken2.report.txt

11 months347 B

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SAMPLE_33.unclassified.fastq.gz

11 months167 MB

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SAMPLE_34.classified.fastq.gz

11 months31.6 kB

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SAMPLE_34.kraken2.classifiedreads.txt

11 months1.21 MB

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SAMPLE_34.kraken2.report.txt

11 months354 B

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SAMPLE_34.unclassified.fastq.gz

11 months12.6 MB

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SAMPLE_35.classified.fastq.gz

11 months3.39 kB

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SAMPLE_35.kraken2.classifiedreads.txt

11 months14 MB

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SAMPLE_35.kraken2.report.txt

11 months347 B

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SAMPLE_35.unclassified.fastq.gz

11 months147 MB

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SAMPLE_36.classified.fastq.gz

11 months75.5 kB

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SAMPLE_36.kraken2.classifiedreads.txt

11 months2.13 MB

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SAMPLE_36.kraken2.report.txt

11 months363 B

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SAMPLE_36.unclassified.fastq.gz

11 months22.1 MB

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SAMPLE_37.classified.fastq.gz

11 months1.39 kB

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SAMPLE_37.kraken2.classifiedreads.txt

11 months11.7 MB

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SAMPLE_37.kraken2.report.txt

11 months347 B

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SAMPLE_37.unclassified.fastq.gz

11 months124 MB

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SAMPLE_38.classified.fastq.gz

11 months89.4 kB

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SAMPLE_38.kraken2.classifiedreads.txt

11 months6.59 MB

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SAMPLE_38.kraken2.report.txt

11 months365 B

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SAMPLE_38.unclassified.fastq.gz

11 months69.2 MB

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SAMPLE_39.classified.fastq.gz

11 months68.4 kB

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SAMPLE_39.kraken2.classifiedreads.txt

11 months29.5 kB

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SAMPLE_39.kraken2.report.txt

11 months359 B

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SAMPLE_39.unclassified.fastq.gz

11 months143 kB

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SAMPLE_40.classified.fastq.gz

11 months257 kB

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SAMPLE_40.kraken2.classifiedreads.txt

11 months393 kB

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SAMPLE_40.kraken2.report.txt

11 months361 B

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SAMPLE_40.unclassified.fastq.gz

11 months3.54 MB

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SAMPLE_41.classified.fastq.gz

11 months2.37 kB

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SAMPLE_41.kraken2.classifiedreads.txt

11 months14.5 MB

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SAMPLE_41.kraken2.report.txt

11 months347 B

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SAMPLE_41.unclassified.fastq.gz

11 months154 MB

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SAMPLE_42.classified.fastq.gz

11 months22.5 kB

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SAMPLE_42.kraken2.classifiedreads.txt

11 months12.3 MB

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SAMPLE_42.kraken2.report.txt

11 months356 B

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SAMPLE_42.unclassified.fastq.gz

11 months130 MB

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SAMPLE_43.classified.fastq.gz

11 months29.2 kB

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SAMPLE_43.kraken2.classifiedreads.txt

11 months10.6 MB

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SAMPLE_43.kraken2.report.txt

11 months356 B

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SAMPLE_43.unclassified.fastq.gz

11 months112 MB

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SAMPLE_44.classified.fastq.gz

11 months167 kB

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SAMPLE_44.kraken2.classifiedreads.txt

11 months2.66 MB

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SAMPLE_44.kraken2.report.txt

11 months363 B

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SAMPLE_44.unclassified.fastq.gz

11 months27.5 MB

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SAMPLE_45.classified.fastq.gz

11 months3.46 kB

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SAMPLE_45.kraken2.classifiedreads.txt

11 months9.16 MB

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SAMPLE_45.kraken2.report.txt

11 months347 B

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SAMPLE_45.unclassified.fastq.gz

11 months96.6 MB

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SAMPLE_46.classified.fastq.gz

11 months372 kB

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SAMPLE_46.kraken2.classifiedreads.txt

11 months1.41 MB

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SAMPLE_46.kraken2.report.txt

11 months363 B

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SAMPLE_46.unclassified.fastq.gz

11 months14 MB

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SAMPLE_47.classified.fastq.gz

11 months3.33 kB

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SAMPLE_47.kraken2.classifiedreads.txt

11 months14.4 MB

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SAMPLE_47.kraken2.report.txt

11 months347 B

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SAMPLE_47.unclassified.fastq.gz

11 months153 MB

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SAMPLE_48.classified.fastq.gz

11 months84.8 kB

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SAMPLE_48.kraken2.classifiedreads.txt

11 months7.38 MB

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SAMPLE_48.kraken2.report.txt

11 months365 B

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SAMPLE_48.unclassified.fastq.gz

11 months77.7 MB

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