Introduction Usage Parameters Output Results Releases
  • Name Last Modified Size
    • artic_minion/ assembly/ fastp/ fastqc/ kraken2/ nanoplot/ pipeline_info/ pycoqc/ variants/
    CONTROL_01.classified.fastq.gz
    about 2 months 48 B
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    CONTROL_01.kraken2.classifiedreads.txt
    about 2 months 612 B
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    CONTROL_01.kraken2.report.txt
    about 2 months 30 B
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    CONTROL_01.unclassified.fastq.gz
    about 2 months 5.08 kB
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    SAMPLE_01.classified.fastq.gz
    about 2 months 728 kB
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    SAMPLE_01.kraken2.classifiedreads.txt
    about 2 months 489 kB
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    SAMPLE_01.kraken2.report.txt
    about 2 months 370 B
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    SAMPLE_01.unclassified.fastq.gz
    about 2 months 3.42 MB
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    SAMPLE_02.classified.fastq.gz
    about 2 months 1.89 kB
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    SAMPLE_02.kraken2.classifiedreads.txt
    about 2 months 18 MB
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    SAMPLE_02.kraken2.report.txt
    about 2 months 347 B
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    SAMPLE_02.unclassified.fastq.gz
    about 2 months 191 MB
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    SAMPLE_03.classified.fastq.gz
    about 2 months 55 kB
    Download file Copy file URL Copy S3 URL
    SAMPLE_03.kraken2.classifiedreads.txt
    about 2 months 2.56 MB
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    SAMPLE_03.kraken2.report.txt
    about 2 months 363 B
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    SAMPLE_03.unclassified.fastq.gz
    about 2 months 26.7 MB
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    SAMPLE_04.classified.fastq.gz
    about 2 months 691 B
    Download file Copy file URL Copy S3 URL
    SAMPLE_04.kraken2.classifiedreads.txt
    about 2 months 15 MB
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    SAMPLE_04.kraken2.report.txt
    about 2 months 347 B
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    SAMPLE_04.unclassified.fastq.gz
    about 2 months 160 MB
    Download file Copy file URL Copy S3 URL
    SAMPLE_05.classified.fastq.gz
    about 2 months 6.6 kB
    Download file Copy file URL Copy S3 URL
    SAMPLE_05.kraken2.classifiedreads.txt
    about 2 months 14 MB
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    SAMPLE_05.kraken2.report.txt
    about 2 months 356 B
    Download file Copy file URL Copy S3 URL
    SAMPLE_05.unclassified.fastq.gz
    about 2 months 149 MB
    Download file Copy file URL Copy S3 URL
    SAMPLE_06.classified.fastq.gz
    about 2 months 609 B
    Download file Copy file URL Copy S3 URL
    SAMPLE_06.kraken2.classifiedreads.txt
    about 2 months 17.4 MB
    Download file Copy file URL Copy S3 URL
    SAMPLE_06.kraken2.report.txt
    about 2 months 347 B
    Download file Copy file URL Copy S3 URL
    SAMPLE_06.unclassified.fastq.gz
    about 2 months 184 MB
    Download file Copy file URL Copy S3 URL
    SAMPLE_07.classified.fastq.gz
    about 2 months 5.51 kB
    Download file Copy file URL Copy S3 URL
    SAMPLE_07.kraken2.classifiedreads.txt
    about 2 months 16.1 MB
    Download file Copy file URL Copy S3 URL
    SAMPLE_07.kraken2.report.txt
    about 2 months 356 B
    Download file Copy file URL Copy S3 URL
    SAMPLE_07.unclassified.fastq.gz
    about 2 months 171 MB
    Download file Copy file URL Copy S3 URL
    SAMPLE_08.classified.fastq.gz
    about 2 months 25 kB
    Download file Copy file URL Copy S3 URL
    SAMPLE_08.kraken2.classifiedreads.txt
    about 2 months 8.02 MB
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    SAMPLE_08.kraken2.report.txt
    about 2 months 356 B
    Download file Copy file URL Copy S3 URL
    SAMPLE_08.unclassified.fastq.gz
    about 2 months 84.5 MB
    Download file Copy file URL Copy S3 URL
    SAMPLE_09.classified.fastq.gz
    about 2 months 91.9 kB
    Download file Copy file URL Copy S3 URL
    SAMPLE_09.kraken2.classifiedreads.txt
    about 2 months 591 kB
    Download file Copy file URL Copy S3 URL
    SAMPLE_09.kraken2.report.txt
    about 2 months 363 B
    Download file Copy file URL Copy S3 URL
    SAMPLE_09.unclassified.fastq.gz
    about 2 months 5.84 MB
    Download file Copy file URL Copy S3 URL
    SAMPLE_10.classified.fastq.gz
    about 2 months 10.7 kB
    Download file Copy file URL Copy S3 URL
    SAMPLE_10.kraken2.classifiedreads.txt
    about 2 months 9.31 MB
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    SAMPLE_10.kraken2.report.txt
    about 2 months 356 B
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    SAMPLE_10.unclassified.fastq.gz
    about 2 months 98.6 MB
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    SAMPLE_11.classified.fastq.gz
    about 2 months 3.56 kB
    Download file Copy file URL Copy S3 URL
    SAMPLE_11.kraken2.classifiedreads.txt
    about 2 months 10.3 MB
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    SAMPLE_11.kraken2.report.txt
    about 2 months 347 B
    Download file Copy file URL Copy S3 URL
    SAMPLE_11.unclassified.fastq.gz
    about 2 months 109 MB
    Download file Copy file URL Copy S3 URL
    SAMPLE_12.classified.fastq.gz
    about 2 months 13 kB
    Download file Copy file URL Copy S3 URL
    SAMPLE_12.kraken2.classifiedreads.txt
    about 2 months 11.5 MB
    Download file Copy file URL Copy S3 URL
    SAMPLE_12.kraken2.report.txt
    about 2 months 356 B
    Download file Copy file URL Copy S3 URL
    SAMPLE_12.unclassified.fastq.gz
    about 2 months 122 MB
    Download file Copy file URL Copy S3 URL
    SAMPLE_13.classified.fastq.gz
    about 2 months 32.6 kB
    Download file Copy file URL Copy S3 URL
    SAMPLE_13.kraken2.classifiedreads.txt
    about 2 months 42.5 kB
    Download file Copy file URL Copy S3 URL
    SAMPLE_13.kraken2.report.txt
    about 2 months 350 B
    Download file Copy file URL Copy S3 URL
    SAMPLE_13.unclassified.fastq.gz
    about 2 months 329 kB
    Download file Copy file URL Copy S3 URL
    SAMPLE_14.classified.fastq.gz
    about 2 months 16.6 kB
    Download file Copy file URL Copy S3 URL
    SAMPLE_14.kraken2.classifiedreads.txt
    about 2 months 11.5 MB
    Download file Copy file URL Copy S3 URL
    SAMPLE_14.kraken2.report.txt
    about 2 months 356 B
    Download file Copy file URL Copy S3 URL
    SAMPLE_14.unclassified.fastq.gz
    about 2 months 122 MB
    Download file Copy file URL Copy S3 URL
    SAMPLE_15.classified.fastq.gz
    about 2 months 94.3 kB
    Download file Copy file URL Copy S3 URL
    SAMPLE_15.kraken2.classifiedreads.txt
    about 2 months 6.09 MB
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    SAMPLE_15.kraken2.report.txt
    about 2 months 365 B
    Download file Copy file URL Copy S3 URL
    SAMPLE_15.unclassified.fastq.gz
    about 2 months 64.1 MB
    Download file Copy file URL Copy S3 URL
    SAMPLE_16.classified.fastq.gz
    about 2 months 4.53 kB
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    SAMPLE_16.kraken2.classifiedreads.txt
    about 2 months 12.4 MB
    Download file Copy file URL Copy S3 URL
    SAMPLE_16.kraken2.report.txt
    about 2 months 356 B
    Download file Copy file URL Copy S3 URL
    SAMPLE_16.unclassified.fastq.gz
    about 2 months 132 MB
    Download file Copy file URL Copy S3 URL
    SAMPLE_17.classified.fastq.gz
    about 2 months 66.4 kB
    Download file Copy file URL Copy S3 URL
    SAMPLE_17.kraken2.classifiedreads.txt
    about 2 months 753 kB
    Download file Copy file URL Copy S3 URL
    SAMPLE_17.kraken2.report.txt
    about 2 months 363 B
    Download file Copy file URL Copy S3 URL
    SAMPLE_17.unclassified.fastq.gz
    about 2 months 7.68 MB
    Download file Copy file URL Copy S3 URL
    SAMPLE_18.classified.fastq.gz
    about 2 months 3.9 kB
    Download file Copy file URL Copy S3 URL
    SAMPLE_18.kraken2.classifiedreads.txt
    about 2 months 15.7 MB
    Download file Copy file URL Copy S3 URL
    SAMPLE_18.kraken2.report.txt
    about 2 months 347 B
    Download file Copy file URL Copy S3 URL
    SAMPLE_18.unclassified.fastq.gz
    about 2 months 166 MB
    Download file Copy file URL Copy S3 URL
    SAMPLE_19.classified.fastq.gz
    about 2 months 227 kB
    Download file Copy file URL Copy S3 URL
    SAMPLE_19.kraken2.classifiedreads.txt
    about 2 months 198 kB
    Download file Copy file URL Copy S3 URL
    SAMPLE_19.kraken2.report.txt
    about 2 months 361 B
    Download file Copy file URL Copy S3 URL
    SAMPLE_19.unclassified.fastq.gz
    about 2 months 1.61 MB
    Download file Copy file URL Copy S3 URL
    SAMPLE_20.classified.fastq.gz
    about 2 months 180 kB
    Download file Copy file URL Copy S3 URL
    SAMPLE_20.kraken2.classifiedreads.txt
    about 2 months 213 kB
    Download file Copy file URL Copy S3 URL
    SAMPLE_20.kraken2.report.txt
    about 2 months 361 B
    Download file Copy file URL Copy S3 URL
    SAMPLE_20.unclassified.fastq.gz
    about 2 months 1.76 MB
    Download file Copy file URL Copy S3 URL
    SAMPLE_21.classified.fastq.gz
    about 2 months 68.9 kB
    Download file Copy file URL Copy S3 URL
    SAMPLE_21.kraken2.classifiedreads.txt
    about 2 months 61.7 kB
    Download file Copy file URL Copy S3 URL
    SAMPLE_21.kraken2.report.txt
    about 2 months 359 B
    Download file Copy file URL Copy S3 URL
    SAMPLE_21.unclassified.fastq.gz
    about 2 months 460 kB
    Download file Copy file URL Copy S3 URL
    SAMPLE_22.classified.fastq.gz
    about 2 months 128 kB
    Download file Copy file URL Copy S3 URL
    SAMPLE_22.kraken2.classifiedreads.txt
    about 2 months 105 kB
    Download file Copy file URL Copy S3 URL
    SAMPLE_22.kraken2.report.txt
    about 2 months 361 B
    Download file Copy file URL Copy S3 URL
    SAMPLE_22.unclassified.fastq.gz
    about 2 months 799 kB
    Download file Copy file URL Copy S3 URL
    SAMPLE_23.classified.fastq.gz
    about 2 months 79.8 kB
    Download file Copy file URL Copy S3 URL
    SAMPLE_23.kraken2.classifiedreads.txt
    about 2 months 58.7 kB
    Download file Copy file URL Copy S3 URL
    SAMPLE_23.kraken2.report.txt
    about 2 months 359 B
    Download file Copy file URL Copy S3 URL
    SAMPLE_23.unclassified.fastq.gz
    about 2 months 443 kB
    Download file Copy file URL Copy S3 URL
    SAMPLE_24.classified.fastq.gz
    about 2 months 605 B
    Download file Copy file URL Copy S3 URL
    SAMPLE_24.kraken2.classifiedreads.txt
    about 2 months 16.4 MB
    Download file Copy file URL Copy S3 URL
    SAMPLE_24.kraken2.report.txt
    about 2 months 347 B
    Download file Copy file URL Copy S3 URL
    SAMPLE_24.unclassified.fastq.gz
    about 2 months 174 MB
    Download file Copy file URL Copy S3 URL
    SAMPLE_25.classified.fastq.gz
    about 2 months 257 kB
    Download file Copy file URL Copy S3 URL
    SAMPLE_25.kraken2.classifiedreads.txt
    about 2 months 1.57 MB
    Download file Copy file URL Copy S3 URL
    SAMPLE_25.kraken2.report.txt
    about 2 months 363 B
    Download file Copy file URL Copy S3 URL
    SAMPLE_25.unclassified.fastq.gz
    about 2 months 16 MB
    Download file Copy file URL Copy S3 URL
    SAMPLE_26.classified.fastq.gz
    about 2 months 356 kB
    Download file Copy file URL Copy S3 URL
    SAMPLE_26.kraken2.classifiedreads.txt
    about 2 months 159 kB
    Download file Copy file URL Copy S3 URL
    SAMPLE_26.kraken2.report.txt
    about 2 months 361 B
    Download file Copy file URL Copy S3 URL
    SAMPLE_26.unclassified.fastq.gz
    about 2 months 921 kB
    Download file Copy file URL Copy S3 URL
    SAMPLE_27.classified.fastq.gz
    about 2 months 173 kB
    Download file Copy file URL Copy S3 URL
    SAMPLE_27.kraken2.classifiedreads.txt
    about 2 months 124 kB
    Download file Copy file URL Copy S3 URL
    SAMPLE_27.kraken2.report.txt
    about 2 months 361 B
    Download file Copy file URL Copy S3 URL
    SAMPLE_27.unclassified.fastq.gz
    about 2 months 882 kB
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    SAMPLE_28.classified.fastq.gz
    about 2 months 3.89 kB
    Download file Copy file URL Copy S3 URL
    SAMPLE_28.kraken2.classifiedreads.txt
    about 2 months 11.7 MB
    Download file Copy file URL Copy S3 URL
    SAMPLE_28.kraken2.report.txt
    about 2 months 347 B
    Download file Copy file URL Copy S3 URL
    SAMPLE_28.unclassified.fastq.gz
    about 2 months 123 MB
    Download file Copy file URL Copy S3 URL
    SAMPLE_29.classified.fastq.gz
    about 2 months 18.6 kB
    Download file Copy file URL Copy S3 URL
    SAMPLE_29.kraken2.classifiedreads.txt
    about 2 months 10.9 MB
    Download file Copy file URL Copy S3 URL
    SAMPLE_29.kraken2.report.txt
    about 2 months 356 B
    Download file Copy file URL Copy S3 URL
    SAMPLE_29.unclassified.fastq.gz
    about 2 months 115 MB
    Download file Copy file URL Copy S3 URL
    SAMPLE_30.classified.fastq.gz
    about 2 months 3.56 kB
    Download file Copy file URL Copy S3 URL
    SAMPLE_30.kraken2.classifiedreads.txt
    about 2 months 13 MB
    Download file Copy file URL Copy S3 URL
    SAMPLE_30.kraken2.report.txt
    about 2 months 347 B
    Download file Copy file URL Copy S3 URL
    SAMPLE_30.unclassified.fastq.gz
    about 2 months 137 MB
    Download file Copy file URL Copy S3 URL
    SAMPLE_31.classified.fastq.gz
    about 2 months 91.2 kB
    Download file Copy file URL Copy S3 URL
    SAMPLE_31.kraken2.classifiedreads.txt
    about 2 months 110 kB
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    SAMPLE_31.kraken2.report.txt
    about 2 months 361 B
    Download file Copy file URL Copy S3 URL
    SAMPLE_31.unclassified.fastq.gz
    about 2 months 938 kB
    Download file Copy file URL Copy S3 URL
    SAMPLE_32.classified.fastq.gz
    about 2 months 5.89 kB
    Download file Copy file URL Copy S3 URL
    SAMPLE_32.kraken2.classifiedreads.txt
    about 2 months 6.92 MB
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    SAMPLE_32.kraken2.report.txt
    about 2 months 356 B
    Download file Copy file URL Copy S3 URL
    SAMPLE_32.unclassified.fastq.gz
    about 2 months 73 MB
    Download file Copy file URL Copy S3 URL
    SAMPLE_33.classified.fastq.gz
    about 2 months 2.37 kB
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    SAMPLE_33.kraken2.classifiedreads.txt
    about 2 months 15.8 MB
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    SAMPLE_33.kraken2.report.txt
    about 2 months 347 B
    Download file Copy file URL Copy S3 URL
    SAMPLE_33.unclassified.fastq.gz
    about 2 months 167 MB
    Download file Copy file URL Copy S3 URL
    SAMPLE_34.classified.fastq.gz
    about 2 months 31.6 kB
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    SAMPLE_34.kraken2.classifiedreads.txt
    about 2 months 1.21 MB
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    SAMPLE_34.kraken2.report.txt
    about 2 months 354 B
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    SAMPLE_34.unclassified.fastq.gz
    about 2 months 12.6 MB
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    SAMPLE_35.classified.fastq.gz
    about 2 months 3.39 kB
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    SAMPLE_35.kraken2.classifiedreads.txt
    about 2 months 14 MB
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    SAMPLE_35.kraken2.report.txt
    about 2 months 347 B
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    SAMPLE_35.unclassified.fastq.gz
    about 2 months 147 MB
    Download file Copy file URL Copy S3 URL
    SAMPLE_36.classified.fastq.gz
    about 2 months 75.5 kB
    Download file Copy file URL Copy S3 URL
    SAMPLE_36.kraken2.classifiedreads.txt
    about 2 months 2.13 MB
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    SAMPLE_36.kraken2.report.txt
    about 2 months 363 B
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    SAMPLE_36.unclassified.fastq.gz
    about 2 months 22.1 MB
    Download file Copy file URL Copy S3 URL
    SAMPLE_37.classified.fastq.gz
    about 2 months 1.39 kB
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    SAMPLE_37.kraken2.classifiedreads.txt
    about 2 months 11.7 MB
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    SAMPLE_37.kraken2.report.txt
    about 2 months 347 B
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    SAMPLE_37.unclassified.fastq.gz
    about 2 months 124 MB
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    SAMPLE_38.classified.fastq.gz
    about 2 months 89.4 kB
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    SAMPLE_38.kraken2.classifiedreads.txt
    about 2 months 6.59 MB
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    SAMPLE_38.kraken2.report.txt
    about 2 months 365 B
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    SAMPLE_38.unclassified.fastq.gz
    about 2 months 69.2 MB
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    SAMPLE_39.classified.fastq.gz
    about 2 months 68.4 kB
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    SAMPLE_39.kraken2.classifiedreads.txt
    about 2 months 29.5 kB
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    SAMPLE_39.kraken2.report.txt
    about 2 months 359 B
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    SAMPLE_39.unclassified.fastq.gz
    about 2 months 143 kB
    Download file Copy file URL Copy S3 URL
    SAMPLE_40.classified.fastq.gz
    about 2 months 257 kB
    Download file Copy file URL Copy S3 URL
    SAMPLE_40.kraken2.classifiedreads.txt
    about 2 months 393 kB
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    SAMPLE_40.kraken2.report.txt
    about 2 months 361 B
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    SAMPLE_40.unclassified.fastq.gz
    about 2 months 3.54 MB
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    SAMPLE_41.classified.fastq.gz
    about 2 months 2.37 kB
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    SAMPLE_41.kraken2.classifiedreads.txt
    about 2 months 14.5 MB
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    SAMPLE_41.kraken2.report.txt
    about 2 months 347 B
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    SAMPLE_41.unclassified.fastq.gz
    about 2 months 154 MB
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    SAMPLE_42.classified.fastq.gz
    about 2 months 22.5 kB
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    SAMPLE_42.kraken2.classifiedreads.txt
    about 2 months 12.3 MB
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    SAMPLE_42.kraken2.report.txt
    about 2 months 356 B
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    SAMPLE_42.unclassified.fastq.gz
    about 2 months 130 MB
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    SAMPLE_43.classified.fastq.gz
    about 2 months 29.2 kB
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    SAMPLE_43.kraken2.classifiedreads.txt
    about 2 months 10.6 MB
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    SAMPLE_43.kraken2.report.txt
    about 2 months 356 B
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    SAMPLE_43.unclassified.fastq.gz
    about 2 months 112 MB
    Download file Copy file URL Copy S3 URL
    SAMPLE_44.classified.fastq.gz
    about 2 months 167 kB
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    SAMPLE_44.kraken2.classifiedreads.txt
    about 2 months 2.66 MB
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    SAMPLE_44.kraken2.report.txt
    about 2 months 363 B
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    SAMPLE_44.unclassified.fastq.gz
    about 2 months 27.5 MB
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    SAMPLE_45.classified.fastq.gz
    about 2 months 3.46 kB
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    SAMPLE_45.kraken2.classifiedreads.txt
    about 2 months 9.16 MB
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    SAMPLE_45.kraken2.report.txt
    about 2 months 347 B
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    SAMPLE_45.unclassified.fastq.gz
    about 2 months 96.6 MB
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    SAMPLE_46.classified.fastq.gz
    about 2 months 372 kB
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    SAMPLE_46.kraken2.classifiedreads.txt
    about 2 months 1.41 MB
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    SAMPLE_46.kraken2.report.txt
    about 2 months 363 B
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    SAMPLE_46.unclassified.fastq.gz
    about 2 months 14 MB
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    SAMPLE_47.classified.fastq.gz
    about 2 months 3.33 kB
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    SAMPLE_47.kraken2.classifiedreads.txt
    about 2 months 14.4 MB
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    SAMPLE_47.kraken2.report.txt
    about 2 months 347 B
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    SAMPLE_47.unclassified.fastq.gz
    about 2 months 153 MB
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    SAMPLE_48.classified.fastq.gz
    about 2 months 84.8 kB
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    SAMPLE_48.kraken2.classifiedreads.txt
    about 2 months 7.38 MB
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    SAMPLE_48.kraken2.report.txt
    about 2 months 365 B
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    SAMPLE_48.unclassified.fastq.gz
    about 2 months 77.7 MB
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