CAGE-sequencing analysis pipeline with trimming, alignment and counting of CAGE tags.
v1.0.0 (Gold Lion) - [2020-10-16]
Initial release of nf-core/cageseq, created with the nf-core template.
- Input read QC (
- Adapter + EcoP15 + 5’G trimming (
- (optional) rRNA filtering (
- Trimmed and filtered read QC (
- Read alignment to a reference genome (
- CAGE tag counting and clustering (
- CAGE tag clustering QC (
- Present QC and visualisation for raw read, alignment and clustering results (