nf-core/denovotranscript

A pipeline for de novo transcriptome assembly of paired-end short reads from bulk RNA-seq

denovo-assemblyrna-seqtranscriptome

Launch version 1.2.1 https://github.com/nf-core/denovotranscript

Name Last Modified Size

Juvenile_K1/ Juvenile_K2/ Juvenile_K3/ all_assembled-arthropoda_odb10-busco/ all_assembled.okay/ all_assembled_output/ dropset/ fastqc/ logs/ multiqc/ okayset/ pipeline_info/ puerulus_H4/ puerulus_H5/ puerulus_H6/ rnaspades/ salmon/

Juvenile_K1.fastp.html

3 days 474 kB

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Juvenile_K1.fastp.json

3 days 122 kB

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Juvenile_K1.fastp.log

3 days 1.32 kB

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Juvenile_K1_1.fastp.fastq.gz

3 days 5.98 MB

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Juvenile_K1_2.fastp.fastq.gz

3 days 6.74 MB

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Juvenile_K1_lib_format_counts.json

2 days 570 B

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Juvenile_K1_meta_info.json

2 days 1.83 kB

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Juvenile_K2.fastp.html

3 days 474 kB

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Juvenile_K2.fastp.json

3 days 123 kB

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Juvenile_K2.fastp.log

3 days 1.32 kB

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Juvenile_K2_1.fastp.fastq.gz

3 days 5.91 MB

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Juvenile_K2_2.fastp.fastq.gz

3 days 6.78 MB

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Juvenile_K2_lib_format_counts.json

2 days 570 B

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Juvenile_K2_meta_info.json

2 days 1.83 kB

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Juvenile_K3.fastp.html

3 days 474 kB

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Juvenile_K3.fastp.json

3 days 123 kB

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Juvenile_K3.fastp.log

3 days 1.32 kB

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Juvenile_K3_1.fastp.fastq.gz

3 days 5.93 MB

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Juvenile_K3_2.fastp.fastq.gz

3 days 6.76 MB

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Juvenile_K3_lib_format_counts.json

2 days 570 B

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Juvenile_K3_meta_info.json

2 days 1.83 kB

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all_assembled-arthropoda_odb10-busco.batch_summary.txt

2 days 147 B

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all_assembled.fa.gz

2 days 5.35 MB

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all_assembled.tx2gene.tsv

2 days 352 kB

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2 days 1.18 kB

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pooled_reads.fa.gz

2 days 2.42 MB

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pooled_reads.log

2 days 709 kB

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pooled_reads_1.merged.fastq.gz

3 days 36.3 MB

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pooled_reads_2.merged.fastq.gz

3 days 40.2 MB

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puerulus_H4.fastp.html

3 days 473 kB

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puerulus_H4.fastp.json

3 days 122 kB

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puerulus_H4.fastp.log

3 days 1.32 kB

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puerulus_H4_1.fastp.fastq.gz

3 days 6.22 MB

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puerulus_H4_2.fastp.fastq.gz

3 days 6.57 MB

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puerulus_H4_lib_format_counts.json

2 days 570 B

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puerulus_H4_meta_info.json

2 days 1.83 kB

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puerulus_H5.fastp.html

3 days 473 kB

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puerulus_H5.fastp.json

3 days 122 kB

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puerulus_H5.fastp.log

3 days 1.32 kB

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puerulus_H5_1.fastp.fastq.gz

3 days 6.24 MB

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puerulus_H5_2.fastp.fastq.gz

3 days 6.61 MB

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puerulus_H5_lib_format_counts.json

2 days 569 B

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puerulus_H5_meta_info.json

2 days 1.83 kB

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puerulus_H6.fastp.html

3 days 473 kB

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puerulus_H6.fastp.json

3 days 122 kB

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puerulus_H6.fastp.log

3 days 1.32 kB

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puerulus_H6_1.fastp.fastq.gz

3 days 5.96 MB

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puerulus_H6_2.fastp.fastq.gz

3 days 6.77 MB

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puerulus_H6_lib_format_counts.json

2 days 570 B

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puerulus_H6_meta_info.json

2 days 1.83 kB

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short_report.pdf

2 days 18.2 kB

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short_report.tex

2 days 1.69 kB

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short_report.tsv

2 days 104 B

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short_report.txt

2 days 361 B

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short_summary.specific.arthropoda_odb10.all_assembled.okay.mrna.json

2 days 2.9 kB

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short_summary.specific.arthropoda_odb10.all_assembled.okay.mrna.txt

2 days 858 B

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2 days 5.59 kB

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