nf-core/denovotranscript

A pipeline for de novo transcriptome assembly of paired-end short reads from bulk RNA-seq

denovo-assemblyrna-seqtranscriptome

Launch version 1.2.1 https://github.com/nf-core/denovotranscript

Name Last Modified Size

Juvenile_K1/ Juvenile_K2/ Juvenile_K3/ all_assembled-arthropoda_odb10-busco/ all_assembled.okay/ all_assembled_output/ dropset/ fastqc/ logs/ multiqc/ okayset/ pipeline_info/ puerulus_H4/ puerulus_H5/ puerulus_H6/ rnaspades/ salmon/

Juvenile_K1.fastp.html

2 months 474 kB

Copy file URL

Copy S3 URL

Juvenile_K1.fastp.json

2 months 122 kB

Copy file URL

Copy S3 URL

Juvenile_K1.fastp.log

2 months 1.32 kB

Copy file URL

Copy S3 URL

Juvenile_K1_1.fastp.fastq.gz

2 months 5.98 MB

Copy file URL

Copy S3 URL

Juvenile_K1_2.fastp.fastq.gz

2 months 6.74 MB

Copy file URL

Copy S3 URL

Juvenile_K1_lib_format_counts.json

2 months 570 B

Copy file URL

Copy S3 URL

Juvenile_K1_meta_info.json

2 months 1.83 kB

Copy file URL

Copy S3 URL

Juvenile_K2.fastp.html

2 months 474 kB

Copy file URL

Copy S3 URL

Juvenile_K2.fastp.json

2 months 123 kB

Copy file URL

Copy S3 URL

Juvenile_K2.fastp.log

2 months 1.32 kB

Copy file URL

Copy S3 URL

Juvenile_K2_1.fastp.fastq.gz

2 months 5.91 MB

Copy file URL

Copy S3 URL

Juvenile_K2_2.fastp.fastq.gz

2 months 6.78 MB

Copy file URL

Copy S3 URL

Juvenile_K2_lib_format_counts.json

2 months 570 B

Copy file URL

Copy S3 URL

Juvenile_K2_meta_info.json

2 months 1.83 kB

Copy file URL

Copy S3 URL

Juvenile_K3.fastp.html

2 months 474 kB

Copy file URL

Copy S3 URL

Juvenile_K3.fastp.json

2 months 123 kB

Copy file URL

Copy S3 URL

Juvenile_K3.fastp.log

2 months 1.32 kB

Copy file URL

Copy S3 URL

Juvenile_K3_1.fastp.fastq.gz

2 months 5.93 MB

Copy file URL

Copy S3 URL

Juvenile_K3_2.fastp.fastq.gz

2 months 6.76 MB

Copy file URL

Copy S3 URL

Juvenile_K3_lib_format_counts.json

2 months 570 B

Copy file URL

Copy S3 URL

Juvenile_K3_meta_info.json

2 months 1.83 kB

Copy file URL

Copy S3 URL

all_assembled-arthropoda_odb10-busco.batch_summary.txt

2 months 147 B

Copy file URL

Copy S3 URL

all_assembled.fa.gz

2 months 5.35 MB

Copy file URL

Copy S3 URL

all_assembled.tx2gene.tsv

2 months 352 kB

Copy file URL

Copy S3 URL

2 months 1.18 kB

Copy file URL

Copy S3 URL

pooled_reads.fa.gz

2 months 2.42 MB

Copy file URL

Copy S3 URL

pooled_reads.log

2 months 709 kB

Copy file URL

Copy S3 URL

pooled_reads_1.merged.fastq.gz

2 months 36.3 MB

Copy file URL

Copy S3 URL

pooled_reads_2.merged.fastq.gz

2 months 40.2 MB

Copy file URL

Copy S3 URL

puerulus_H4.fastp.html

2 months 473 kB

Copy file URL

Copy S3 URL

puerulus_H4.fastp.json

2 months 122 kB

Copy file URL

Copy S3 URL

puerulus_H4.fastp.log

2 months 1.32 kB

Copy file URL

Copy S3 URL

puerulus_H4_1.fastp.fastq.gz

2 months 6.22 MB

Copy file URL

Copy S3 URL

puerulus_H4_2.fastp.fastq.gz

2 months 6.57 MB

Copy file URL

Copy S3 URL

puerulus_H4_lib_format_counts.json

2 months 570 B

Copy file URL

Copy S3 URL

puerulus_H4_meta_info.json

2 months 1.83 kB

Copy file URL

Copy S3 URL

puerulus_H5.fastp.html

2 months 473 kB

Copy file URL

Copy S3 URL

puerulus_H5.fastp.json

2 months 122 kB

Copy file URL

Copy S3 URL

puerulus_H5.fastp.log

2 months 1.32 kB

Copy file URL

Copy S3 URL

puerulus_H5_1.fastp.fastq.gz

2 months 6.24 MB

Copy file URL

Copy S3 URL

puerulus_H5_2.fastp.fastq.gz

2 months 6.61 MB

Copy file URL

Copy S3 URL

puerulus_H5_lib_format_counts.json

2 months 569 B

Copy file URL

Copy S3 URL

puerulus_H5_meta_info.json

2 months 1.83 kB

Copy file URL

Copy S3 URL

puerulus_H6.fastp.html

2 months 473 kB

Copy file URL

Copy S3 URL

puerulus_H6.fastp.json

2 months 122 kB

Copy file URL

Copy S3 URL

puerulus_H6.fastp.log

2 months 1.32 kB

Copy file URL

Copy S3 URL

puerulus_H6_1.fastp.fastq.gz

2 months 5.96 MB

Copy file URL

Copy S3 URL

puerulus_H6_2.fastp.fastq.gz

2 months 6.77 MB

Copy file URL

Copy S3 URL

puerulus_H6_lib_format_counts.json

2 months 570 B

Copy file URL

Copy S3 URL

puerulus_H6_meta_info.json

2 months 1.83 kB

Copy file URL

Copy S3 URL

short_report.pdf

2 months 18.2 kB

Copy file URL

Copy S3 URL

short_report.tex

2 months 1.69 kB

Copy file URL

Copy S3 URL

short_report.tsv

2 months 104 B

Copy file URL

Copy S3 URL

short_report.txt

2 months 361 B

Copy file URL

Copy S3 URL

short_summary.specific.arthropoda_odb10.all_assembled.okay.mrna.json

2 months 2.9 kB

Copy file URL

Copy S3 URL

short_summary.specific.arthropoda_odb10.all_assembled.okay.mrna.txt

2 months 858 B

Copy file URL

Copy S3 URL

2 months 5.59 kB

Copy file URL

Copy S3 URL