Contributing
- Adding a new pipeline
- Code editor plugins
- Code formatting
- Contributing to an existing pipeline
- DSL2 Modules
- DSL2 Subworkflows
- Developer Tutorials
- Gitpod
- Graphic design guidelines
- Guidelines
- Pipeline Release Review Guidelines
- Release checklist
- Special content elements
- Synchronisation
- Test data guidelines
- Training material guide
Pipelines should work with best practice modern file formats, as accepted by the community.
Where possible, genomics pipelines should generate CRAM alignment files by default, but have a --bam option to generate BAM outputs if required by the user.