Here you can find all documentation on how to use nf-core pipelines, and nf-core tools to start processing your data. You will also find information on how to contribute to nf-core pipelines, modules and subworkflows.
Usage
Contributing
- Adding a new pipeline
- Code editor plugins
- Code formatting
- Contributing to an existing pipeline
- DSL2 Modules
- DSL2 Subworkflows
- Developer Tutorials
- Gitpod
- Graphic design guidelines
-
Guidelines
- Bundled documentation
- Cloud compatible
- Continuous integration testing
- Credits and Acknowledgements
- DOIs
- Docker Support
- File formats
- Identity and branding
- Keywords
- Minimum inputs
- Pass lint tests
- Semantic versioning
- Single command
- Software license
- Standardised parameters
- Use Bioconda
- Use nf-core git branches
- Use the template
- Workflow name
- Workflow size
- Workflow specificity
- Publication Credit
- Pipeline Release Review Guidelines
- Release checklist
- Special content elements
- Synchronisation
- Test data guidelines
- Training material guide