usage
Here you can find all documentation on how to use nf-core pipelines, and nf-core tools to start processing your data. You will also find information on how to contribute to nf-core pipelines, modules and subworkflows.
Usage
Getting started
How to run your first nf-core pipeline.
Installation
Install the software requirements needed to run nf-core pipelines.
Pipeline configuration
How configure Nextflow to work on your system
Reference Genomes
How reference genomes are handled in nf-core
Running offline
How to use nf-core pipelines without an internet connection.
Data management
How to plan your project, estimate resources, and share your results.
Troubleshooting
How to troubleshoot common mistakes and issues