Nextflow tutorials

Although an in-depth knowledge of Nextflow isn’t necessary to run nf-core pipelines, some familiarity is essential to run the Nextflow commands and properly configure your system.

Some key Nextflow resources:

• Documentation and reference material:
  • Nextflow homepage: https://www.nextflow.io/
  • Pipeline examples: https://www.nextflow.io/example1.html
  • Main documentation: https://www.nextflow.io/docs/latest/index.html
  • Common implementation patterns for developers: http://nextflow-io.github.io/patterns/index.html
• Official Nextflow Training (available in english, spanish and portuguese): https://training.nextflow.io
• Others tutorials and workshops:
  • Introduction to Bioinformatics workflows with Nextflow and nf-core (Pre-alpha Software Carpentries course): https://carpentries-incubator.github.io/workflows-nextflow/
  • Nextflow Training - Radio Astronomy Edition (Carpentries course:) https://adacs.org.au/project/nextflow-training-2022b/
  • Nextflow Tutorial - Variant Calling Edition: https://sateeshperi.github.io/nextflow_varcal/
  • Rinn Lab 2022 undergraduate course lectures, covering Nextflow and nf-core:
    • https://github.com/boulderrinnlab/CLASS_2022
    • https://www.youtube.com/watch?v=Hotf471yYVE&list=PLK_W6cepCrQ3yx6DEHk6fatwnjbaTdqDo
  • Nextflow workshop 2022: https://seqera.io/nextflow/workshop/
  • Learning Nextflow in 2023: https://www.nextflow.io/blog/2023/learn-nextflow-in-2023.html
  • Nextflow Windows 10 environment setup tutorial: https://nextflow.io/blog/2021/setup-nextflow-on-windows.html
  • Nextflow DSL1 Workshop 2018: https://nextflow-io.github.io/nf-hack18
  • Nextflow Camp 2019 DSLv2 tutorial: https://github.com/nextflow-io/nfcamp-tutorial
• Running Nextflow in the cloud:
  • AWS Batch tutorial: https://docs.opendata.aws/genomics-workflows/orchestration/nextflow/nextflow-overview.html
  • Get Started with Nextflow on Google Cloud Batch: https://www.nextflow.io/blog/2023/nextflow-with-gbatch.html
  • Google Cloud tutorial: https://cloud.google.com/genomics/docs/tutorials/nextflow
  • Microsoft Azure tutorial: https://nextflow.io/blog/2021/introducing-nextflow-for-azure-batch.html For Nextflow questions, use the Nextflow Slack community: https://nextflow.io/slack-invite.html

For nf-core questions, get in touch with the nf-core Slack community: https://nf-co.re/join.