- Overview Set up your environment
- Nextflow Install Nextflow
- Software dependencies Manage software dependencies
- nf-core tools Install nf-core/tools
- VS Code Install VS Code and extensions
- Dev Containers Use and create Dev Containers
- Prettier Maintain consistent code style
- Troubleshooting Troubleshoot common issues
Get started
New to nf-core? Start here to learn the basics and run your first pipeline.
What is nf-core?
- What is nf-core? Learn about nf-core
Environment setup
Run your first pipeline
- Run your first pipeline Run your first pipeline
- Get started
- Running
- Developing
- Overview
- Containers
- Documentation
- External use
- Institutional profiles
- Migration guides
- Testing
- Contributing
- Overview
- How to contribute
- Components
- Contributor types
- Contributor's list
- Documentation
- Existing pipelines
- New pipelines
- Project proposals
- Reviewing pull requests
- nf-core bot
- Review checklists
- Specifications
- Overview
- Pipelines
- Community
- nf-core/tools
- CLI
- Installation
- Test datasets
- TUI
- API
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