Description

Creates Kraken-style reports from centrifuge out files

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

report (file)

File containing the centrifuge classification report

*.{txt}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

kreport (file)

File containing kraken-style report from centrifuge
out files.

*.{txt}
included in
taxprofiler
authors
Github user sofstam Github user jfy133
get in touch
Ask a question on Slack Open an issue on GitHub

Tools

centrifuge
GPL v3

Centrifuge is a classifier for metagenomic sequences.

ccb.jhu.edu/software/centrifuge ccb.jhu.edu/software/centrifuge/manual. 10.1101/gr.210641.116