Description

Creates Kraken-style reports from centrifuge out files

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

report (file)

File containing the centrifuge classification report

*.{txt}

db (directory)

Path to directory containing centrifuge database files

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

kreport (file)

File containing kraken-style report from centrifuge
out files.

*.{txt}

Tools

centrifuge
GPL v3

Centrifuge is a classifier for metagenomic sequences.