Description

Perform adapter/quality trimming on sequencing reads

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

reads (file)

List of input FastQ files of size 1 and 2 for single-end and paired-end data,
respectively.

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

reads (file)

The trimmed/modified fastq reads

*fastq.gz

log (file)

cuatadapt log file

*cutadapt.log

versions (file)

File containing software versions

versions.yml

Tools

cuatadapt
MIT

Cutadapt finds and removes adapter sequences, primers, poly-A tails and other types of unwanted sequence from your high-throughput sequencing reads.