Perform adapter/quality trimming on sequencing reads
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
reads:file
List of input FastQ files of size 1 and 2 for single-end and paired-end data, respectively.
reads
*.trim.fastq.gz:file
The trimmed/modified fastq reads
*fastq.gz
log
*.log:file
cuatadapt log file
*cutadapt.log
versions
versions.yml:file
File containing software versions
versions.yml
Cutadapt finds and removes adapter sequences, primers, poly-A tails and other types of unwanted sequence from your high-throughput sequencing reads.
