phylogenetic placement of query sequences in a reference tree
meta:map
Groovy Map containing sample information e.g. [ id:‘test’ ]
queryaln:file
aligned query sequences in any supported format including phylip and fasta, may be gzipped
*
referencealn:file
reference alignment in any supported format including phylip and fasta, may be gzipped
referencetree:file
newick file containing the reference tree in which query sequences will be placed
bfastfile:file
file argument to the —bfast parameter
binaryfile:file
file argument to the —binary parameter
epang
./.:directory
directory in which EPA-NG was run
jplace
*.epa_result.jplace.gz:file
gzipped file with placement information
*.jplace.gz
log
*.epa_info.log:file
log file from placement
*.log
versions
versions.yml:file
File containing software versions
versions.yml
Massively parallel phylogenetic placement of genetic sequences
