Description

phylogenetic placement of query sequences in a reference tree

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’ ]

queryaln (file)

aligned query sequences in any supported format including phylip and fasta, may be gzipped

*

referencealn (file)

reference alignment in any supported format including phylip and fasta, may be gzipped

*

referencetree (file)

newick file containing the reference tree in which query sequences will be placed

*

bfastfile (file)

file argument to the —bfast parameter

*

binaryfile (file)

file argument to the —binary parameter

*

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’ ]

epang (directory)

directory in which EPA-NG was run

jplace (file)

gzipped file with placement information

*.jplace.gz

log (file)

log file from placement

*.log

versions (file)

File containing software versions

versions.yml
included in
ampliseq phyloplace
maintainer
Github user erikrikarddaniel
get in touch
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Tools

epang
GNU Affero General Public License v3.0

Massively parallel phylogenetic placement of genetic sequences

github.com/Pbdas/epa-ng github.com/Pbdas/epa-ng/wiki/Full-Stack-Example https://github.com/Pbdas/epa-ng 10.1093/sysbio/syy054