Input
Name (Type)
Description
Pattern
(optional) Either a (CheckM)[https://nf-co.re/modules/checkm_lineagewf] summary TSV containing
information on the completeness and contamination of the input genomes (13 columns),
or a 3-column csv with the header genome,completeness,contamination
.
In both cases the first column should contain the names of the input genome files,
minus the last file extension
(i.e. if the genome is gzipped, the genome name should retain the .fasta extension).
*.{csv,tsv}