assigns taxonomy to query sequences in phylogenetic placement output
meta:map
Groovy Map containing sample information e.g. [ id:‘test’ ]
jplace:file
jplace file output from phylogenetic placement, e.g. EPA-NG, gzipped or not
*.{jplace,jplace.gz}
taxonomy:file
taxonomy file
examineassign
./.:directory
Execution directory
profile
*profile.tsv:file
profile tsv file
*profile.tsv
labelled_tree
*labelled_tree.newick:file
labelled tree in newick format
*labelled_tree.newick
per_query
*per_query.tsv:file
per query taxonomy assignments in tsv format
*per_query.tsv
krona
*krona.profile:file
krona profile file
*krona.profile
sativa
*sativa.tsv:file
sativa output file
*sativa.tsv
versions
versions.yml:file
File containing software versions
versions.yml
Genesis Applications for Phylogenetic Placement Analysis
