colours a phylogeny with placement densities
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’ ]
jplace{:bash}
:file
jplace file output from phylogenetic placement, e.g. EPA-NG, gzipped or not
*.{jplace,jplace.gz}
newick{:bash}
*.newick{:bash}
phylogenetic tree file in newick format
*.newick
nexus{:bash}
*.nexus{:bash}
coloured phylogenetic tree file in nexus format
*.nexus
phyloxml{:bash}
*.phyloxml{:bash}
coloured phylogenetic tree file in phyloxml format
*.phyloxml
svg{:bash}
*.svg{:bash}
coloured phylogenetic tree file in svg format
*.svg
colours{:bash}
*.colours.txt{:bash}
colours used in plot
*.colours.txt
log{:bash}
*.log{:bash}
log file from the run
*.log
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
Genesis Applications for Phylogenetic Placement Analysis
