colours a phylogeny with placement densities
meta:map
Groovy Map containing sample information e.g. [ id:‘test’ ]
jplace:file
jplace file output from phylogenetic placement, e.g. EPA-NG, gzipped or not
*.{jplace,jplace.gz}
newick
*.newick:file
phylogenetic tree file in newick format
*.newick
nexus
*.nexus:file
coloured phylogenetic tree file in nexus format
*.nexus
phyloxml
*.phyloxml:file
coloured phylogenetic tree file in phyloxml format
*.phyloxml
svg
*.svg:file
coloured phylogenetic tree file in svg format
*.svg
colours
*.colours.txt:file
colours used in plot
*.colours.txt
log
*.log:file
log file from the run
*.log
versions
versions.yml:file
File containing software versions
versions.yml
Genesis Applications for Phylogenetic Placement Analysis
