Description

reformats sequence files, see HMMER documentation for details. The module requires that the format is specified in ext.args in a config file, and that this comes last. See the tools help for possible values.

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’ ]

seqfile (file)

Sequences, aligned or not, in any supported format

*

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

seqreformated (file)

Reformated sequence file

*.*.gz
included in
ampliseq phyloplace
author
Github user erikrikarddaniel
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Tools

hmmer
BSD-3-Clause

Biosequence analysis using profile hidden Markov models

http://hmmer.org http://hmmer.org/documentation 10.1371/journal.pcbi.1002195