Description

reformats sequence files, see HMMER documentation for details. The module requires that the format is specified in ext.args in a config file, and that this comes last. See the tools help for possible values.

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’ ]

seqfile:file

Sequences, aligned or not, in any supported format

*

Output

name:type
description
pattern

seqreformated

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.*.gz:file

Reformated sequence file

*.*.gz

versions

versions.yml:file

File containing software versions

versions.yml

Tools

hmmer
BSD-3-Clause

Biosequence analysis using profile hidden Markov models

http://hmmer.org http://hmmer.org/documentation 10.1371/journal.pcbi.1002195
included in
ampliseq phyloplace
maintainer
Github user erikrikarddaniel
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