modules/hmmer_eslreformat

reformats sequence files, see HMMER documentation for details. The module requires that the format is specified in ext.args in a config file, and that this comes last. See the tools help for possible values.

sorthmmerreformat

https://github.com/nf-core/modules/[...]/modules/nf-core/hmmer/eslreformat

Description

Input

name:type

description

pattern

`meta:map`

Groovy Map containing sample information e.g. [ id:‘test’ ]

`seqfile:file`

Sequences, aligned or not, in any supported format

*

Output

name:type

description

pattern

`seqreformated`

`meta:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

`..gz:file`

Reformatted sequence file

*.*.gz

`versions`

`versions.yml:file`

File containing software versions

versions.yml

Tools

hmmer
BSD-3-Clause

Biosequence analysis using profile hidden Markov models

http://hmmer.org http://hmmer.org/documentation 10.1371/journal.pcbi.1002195

modules/hmmer_eslreformat

Description

Input

meta:map

seqfile:file

Output

seqreformated

meta:map

*.*.gz:file

versions

versions.yml:file

Tools

hmmer BSD-3-Clause

`meta:map`

`seqfile:file`

`seqreformated`

`meta:map`

`..gz:file`

`versions`

`versions.yml:file`

hmmer
BSD-3-Clause