hmmalign from the HMMER suite aligns a number of sequences to an HMM profile
meta:map
Groovy Map containing sample information e.g. [ id:‘test’ ]
fasta:file
Amino acid or nucleotide gzipped compressed fasta file
*.{fna.gz,faa.gz,fasta.gz,fa.gz}
hmm:file
A gzipped HMM file
*.hmm.gz
sto
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
*.sto.gz:file
Multiple alignment in gzipped Stockholm format
*.sto.gz
versions
versions.yml:file
File containing software versions
versions.yml
Biosequence analysis using profile hidden Markov models
