create an hmm profile from a multiple sequence alignment
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end
alignment:file
multiple sequence alignment in fasta, clustal, stockholm or phylip format
*
mxfile:file
read substitution score matrix, for use when building profiles from single sequences (—singlemx option)
hmm
meta:file
Gzipped HMM file
*.{hmm.gz}
*.hmm.gz:file
hmmbuildout
*.hmmbuild.txt:file
HMM build output
versions
versions.yml:file
File containing software versions
versions.yml
Biosequence analysis using profile hidden Markov models
