create an hmm profile from a multiple sequence alignment
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
alignment
:file
multiple sequence alignment in fasta, clustal, stockholm or phylip format
*
mxfile
read substitution score matrix, for use when building profiles from single sequences (—singlemx option)
hmm
*.hmm.gz
Gzipped HMM file
*.{hmm.gz}
hmmbuildout
*.hmmbuild.txt
HMM build output
versions_hmmer
${task.process}
:string
The name of the process
hmmer
The name of the tool
hmmsearch -h | sed '2!d;s/^# HMMER *//;s/ .*//'
:eval
The expression to obtain the version of the tool
versions
Biosequence analysis using profile hidden Markov models
