Description

Multiple sequence alignment using MAFFT

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

fasta (file)

FASTA file containing the sequences to align

*.{fa,fasta}

addsequences (file)

FASTA file containing sequences to align to the sequences in fasta

*.{fa,fasta}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

fas (file)

Aligned sequences in FASTA format

*.{fas}

Tools